BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZE08RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1146 1600 0.0
>3x_Contig1146
Length = 4612
Score = 1600 bits (807), Expect = 0.0
Identities = 858/869 (98%), Gaps = 5/869 (0%)
Strand = Plus / Minus
Query: 47 taaagaaatgtcaaactcatttcccgttgattttgattgacgaaattgataagattgggc 106
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 899 taaagaaatgtcaaactcaaaacccgttgattttgattgacgaaattgataagattgggc 840
Query: 107 acggcggtatccatggggaccccgccgcagcgctattagaattattagacccagaacaaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 acggcggtatccatggggaccccgccgcagcgctattagaattattagacccagaacaaa 780
Query: 167 acaatagtttcttggacaactatatggatattccaatcgatttgtctaaagttttattcg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 acaatagtttcttggacaactatatggatattccaatcgatttgtctaaagttttattcg 720
Query: 227 tttgcaccgctaattctttagaaactatcccaagaccattgttggaccgtatggaagtca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tttgcaccgctaattctttagaaactatcccaagaccattgttggaccgtatggaagtca 660
Query: 287 ttgaactaactggttatgttgctgaagaaaaggttaagatcgcagaaaattatctatcgc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ttgaactaactggttatgttgctgaagaaaaggttaagatcgcagaaaattatctatcgc 600
Query: 347 caagtgcaaagaaatctgctggtttagataatgctaacgtcaacattaccgagaatgcta 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 caagtgcaaagaaatctgctggtttagataatgctaacgtcaacattaccgagaatgcta 540
Query: 407 ttgtttctttgatgaagcattactgcagagaaagtggtgttagatcattgaaaaagcaca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ttgtttctttgatgaagcattactgcagagaaagtggtgttagatcattgaaaaagcaca 480
Query: 467 ttgagaaaatctaccgtaaggctgcgttgaacgtcgttaaacaattgagcatagacgata 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttgagaaaatctaccgtaaggctgcgttgaacgtcgttaaacaattgagcatagacgata 420
Query: 527 aacctatggaaaatgaagaagtgaaggatcaaaaggatataaaggtcaagcaatccgaaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aacctatggaaaatgaagaagtgaaggatcaaaaggatataaaggtcaagcaatccgaaa 360
Query: 587 acaaatctagtgctgaagcatcgaccgtagaatccactactgaagaaaatgaactgatca 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 acaaatctagtgctgaagcatcgaccgtagaatccactactgaagaaaatgaactgatca 300
Query: 647 agacccaaaaatctcacgataacaagggttccttagaagtaccggaaactgtttctgtga 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 agacccaaaaatctcacgataacaagggttccttagaagtaccggaaactgtttctgtga 240
Query: 707 ctgtagacgaaaacaacctaaaggattacgtaggtccaccaatcttcactactgatagat 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ctgtagacgaaaacaacctaaaggattacgtaggtccaccaatcttcactactgatagat 180
Query: 767 tatacgaatctactnctcctggtgttgtgatgggtcttgcatggactagcatgggtggat 826
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tatacgaatctactcctcctggtgttgtgatgggtcttgcatggactagcatgggtggat 120
Query: 827 gtgcaatgtacgtagagagtgttttag-acagcctttg-cacattc-acttaacctactt 883
||||||||||||||||||||||||||| |||||||||| ||||||| ||| |||||||||
Sbjct: 119 gtgcaatgtacgtagagagtgttttagaacagcctttgacacattcaactcaacctactt 60
Query: 884 tag-acgtaccggcc-acttgnagatgta 910
||| ||||||||||| ||||| |||||||
Sbjct: 59 tagaacgtaccggccaacttggagatgta 31
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6531
Number of Sequences: 1807
Number of extensions: 6531
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)