BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC17ZE08RM1.SCF screened BAC_end (930 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1146 1600 0.0 >3x_Contig1146 Length = 4612 Score = 1600 bits (807), Expect = 0.0 Identities = 858/869 (98%), Gaps = 5/869 (0%) Strand = Plus / Minus Query: 47 taaagaaatgtcaaactcatttcccgttgattttgattgacgaaattgataagattgggc 106 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 899 taaagaaatgtcaaactcaaaacccgttgattttgattgacgaaattgataagattgggc 840 Query: 107 acggcggtatccatggggaccccgccgcagcgctattagaattattagacccagaacaaa 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 839 acggcggtatccatggggaccccgccgcagcgctattagaattattagacccagaacaaa 780 Query: 167 acaatagtttcttggacaactatatggatattccaatcgatttgtctaaagttttattcg 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 779 acaatagtttcttggacaactatatggatattccaatcgatttgtctaaagttttattcg 720 Query: 227 tttgcaccgctaattctttagaaactatcccaagaccattgttggaccgtatggaagtca 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 719 tttgcaccgctaattctttagaaactatcccaagaccattgttggaccgtatggaagtca 660 Query: 287 ttgaactaactggttatgttgctgaagaaaaggttaagatcgcagaaaattatctatcgc 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 659 ttgaactaactggttatgttgctgaagaaaaggttaagatcgcagaaaattatctatcgc 600 Query: 347 caagtgcaaagaaatctgctggtttagataatgctaacgtcaacattaccgagaatgcta 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 599 caagtgcaaagaaatctgctggtttagataatgctaacgtcaacattaccgagaatgcta 540 Query: 407 ttgtttctttgatgaagcattactgcagagaaagtggtgttagatcattgaaaaagcaca 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 539 ttgtttctttgatgaagcattactgcagagaaagtggtgttagatcattgaaaaagcaca 480 Query: 467 ttgagaaaatctaccgtaaggctgcgttgaacgtcgttaaacaattgagcatagacgata 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 479 ttgagaaaatctaccgtaaggctgcgttgaacgtcgttaaacaattgagcatagacgata 420 Query: 527 aacctatggaaaatgaagaagtgaaggatcaaaaggatataaaggtcaagcaatccgaaa 586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 419 aacctatggaaaatgaagaagtgaaggatcaaaaggatataaaggtcaagcaatccgaaa 360 Query: 587 acaaatctagtgctgaagcatcgaccgtagaatccactactgaagaaaatgaactgatca 646 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 359 acaaatctagtgctgaagcatcgaccgtagaatccactactgaagaaaatgaactgatca 300 Query: 647 agacccaaaaatctcacgataacaagggttccttagaagtaccggaaactgtttctgtga 706 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 299 agacccaaaaatctcacgataacaagggttccttagaagtaccggaaactgtttctgtga 240 Query: 707 ctgtagacgaaaacaacctaaaggattacgtaggtccaccaatcttcactactgatagat 766 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 239 ctgtagacgaaaacaacctaaaggattacgtaggtccaccaatcttcactactgatagat 180 Query: 767 tatacgaatctactnctcctggtgttgtgatgggtcttgcatggactagcatgggtggat 826 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 179 tatacgaatctactcctcctggtgttgtgatgggtcttgcatggactagcatgggtggat 120 Query: 827 gtgcaatgtacgtagagagtgttttag-acagcctttg-cacattc-acttaacctactt 883 ||||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||| Sbjct: 119 gtgcaatgtacgtagagagtgttttagaacagcctttgacacattcaactcaacctactt 60 Query: 884 tag-acgtaccggcc-acttgnagatgta 910 ||| ||||||||||| ||||| ||||||| Sbjct: 59 tagaacgtaccggccaacttggagatgta 31 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6531 Number of Sequences: 1807 Number of extensions: 6531 Number of successful extensions: 31 Number of sequences better than 1.0e-20: 1 length of query: 930 length of database: 10,358,551 effective HSP length: 16 effective length of query: 914 effective length of database: 10,329,639 effective search space: 9441290046 effective search space used: 9441290046 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)