BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZE10FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1328 1618 0.0
>3x_Contig1328
Length = 7255
Score = 1618 bits (816), Expect = 0.0
Identities = 857/869 (98%), Gaps = 2/869 (0%)
Strand = Plus / Minus
Query: 86 tgaaaattgaagaaaaccagtttataagttaaagttatcggcgtattcaacttagaacag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2913 tgaaaattgaagaaaaccagtttataagttaaagttatcggcgtattcaacttagaacag 2854
Query: 146 aaaacagggggaaggttcaaagctgtcatcatccagctacacgatatgagcacctctgca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2853 aaaacagggggaaggttcaaagctgtcatcatccagctacacgatatgagcacctctgca 2794
Query: 206 ccatatctactcggacggtatgtatcgtgaaataaagttgttgcttaaaaaggctttact 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2793 ccatatctactcggacggtatgtatcgtgaaataaagttgttgcttaaaaaggctttact 2734
Query: 266 ctagcagaagaggcccaatatgtttactaacttaattcttcattgtgactttgatacagt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2733 ctagcagaagaggcccaatatgtttactaacttaattcttcattgtgactttgatacagt 2674
Query: 326 ttcctagacccggtgtttgctatagcggtcggagcgtttagttatcactcgtatgagaaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2673 ttcctagacccggtgtttgctatagcggtcggagcgtttagttatcactcgtatgagaaa 2614
Query: 386 aaggtgcaaagacctgagggacatactttgaatgagctactaaagaagaagtgggataga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2613 aaggtgcaaagacctgagggacatactttgaatgagctactaaagaagaagtgggataga 2554
Query: 446 atgagtaataaatgagtggcttgcagtttattgcgaccttctctaaagaattaaaaattg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2553 atgagtaataaatgagtggcttgcagtttattgcgaccttctctaaagaattaaaaattg 2494
Query: 506 atttttagtgttaatgatactaagagtacattgatgcaaacctggtactcagaataccgt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2493 atttttagtgttaatgatactaagagtacattgatgcaaacctggtactcagaataccgt 2434
Query: 566 ttgatagagaatgttgccatatatttggaggaatctttcattaaattaacatttctattt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2433 ttgatagagaatgttgccatatatttggaggaatctttcattaaattaacatttctattt 2374
Query: 626 ttacatatatgtatactttataattaaaacaatcaaaaaattattaatgtgtatatcgag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2373 ttacatatatgtatactttataattaaaacaatcaaaaaattattaatgtgtatatcgag 2314
Query: 686 ggggaagtagtgaatttcacattcaatttttcgttagtgtttaggtgaattctttttcag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2313 ggggaagtagtgaatttcacattcaatttttcgttagtgtttaggtgaattctttttcag 2254
Query: 746 cgaacgatagctgtcatattgntttagagcccaccttcattaccaag-ttcagagaattt 804
||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||
Sbjct: 2253 cgaacgatagctgtcatattgtttaagagcccaccttcattaccaagtttcagagaattg 2194
Query: 805 ggacatatcatcagattgtaacattaggtttccagctctgtcatttttcaatctagtatc 864
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2193 gaacatatcatcagattgtaacattaggtttccagctctgtcattttccaatctagtatc 2134
Query: 865 -aaagtaaatcccgagacatagttatttagntgttgctctacctcgtgcgaaggatctga 923
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2133 aaaagtaaatcccgagacatagttatttagttgttgctctacctcgtgcgaaggatctga 2074
Query: 924 ttttanaaaggttattgacatgagatcat 952
||| ||||||||||||||||||||||
Sbjct: 2073 tttagagaaggttattgacatgagatcat 2045
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6944
Number of Sequences: 1807
Number of extensions: 6944
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)