BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZE10RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1281 791 0.0
3x_Contig748 688 0.0
>3x_Contig1281
Length = 7825
Score = 791 bits (399), Expect = 0.0
Identities = 402/403 (99%)
Strand = Plus / Plus
Query: 48 tcagtttcaggaaggctggtcgattttttagcagtaggcgattcggtaagcgttctattt 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7423 tcagtttcaggaaggctggccgattttttagcagtaggcgattcggtaagcgttctattt 7482
Query: 108 tgttccacgaaagcttcgatagtactatcagcagtgatgttatcaaaaattgatgccccg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7483 tgttccacgaaagcttcgatagtactatcagcagtgatgttatcaaaaattgatgccccg 7542
Query: 168 gatttaccatctagtaatttctttctagccaatgcacgtttacgagtactagatggatct 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7543 gatttaccatctagtaatttctttctagccaatgcacgtttacgagtactagatggatct 7602
Query: 228 ccttttgaaggagctgcatttttcaatttatccaaaagcttctctatatcgtccctatca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7603 ccttttgaaggagctgcatttttcaatttatccaaaagcttctctatatcgtccctatca 7662
Query: 288 tcagacggttcttgcgaagtgcttaaattttttgctgttgccttactatctgcctcctgt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7663 tcagacggttcttgcgaagtgcttaaattttttgctgttgccttactatctgcctcctgt 7722
Query: 348 tgtttccgttgttgatcttcaatcattttctttctcctttcgtaagcacgttcttcttct 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7723 tgtttccgttgttgatcttcaatcattttctttctcctttcgtaagcacgttcttcttct 7782
Query: 408 tccagtttgacattatgagttttagctttcttgaattcggtaa 450
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7783 tccagtttgacattatgagttttagctttcttgaattcggtaa 7825
>3x_Contig748
Length = 2621
Score = 688 bits (347), Expect = 0.0
Identities = 382/390 (97%), Gaps = 3/390 (0%)
Strand = Plus / Minus
Query: 526 gattttcaaattccagcaaacttaatttgatttcatcgcttagaagatcagctttctttc 585
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2621 gattttgaaattccagcaaacttaatttgatttcatcgcttagaagatcagctttctttc 2562
Query: 586 tagcttcaggtaaaaccggtactaccttatttaaaacacgatctaacggatggaatttag 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2561 tagcttcaggtaaaaccggtactaccttatttaaaacacgatctaacggatggaatttag 2502
Query: 646 aagggtcacttaggtttccaatttcaatagaacgctcaacgttaattactgactgtgaaa 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2501 aagggtcacttaggtttccaatttcaatagaacgctcaacgttaattactgactgtgaaa 2442
Query: 706 attccttacaatcagttaccaactgttcgatggatattnttgttacgctaaaaataggct 765
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2441 attccttacaatcagttaccaactgttcgatggatatttttgttacgctaaaaataggct 2382
Query: 766 caagctcttccacgaaatggctgtattcgggataattttcacgaattatcttttccacat 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2381 caagctcttccacgaaatggctgtattcgggataattttcacgaattatcttttccacat 2322
Query: 826 agttc-aaaaagtcatactggtcttttcatcttttatgaaagtcaatcttttgta-ggtg 883
||||| |||||||||||||| ||||||||||||| ||||| ||||||| |||||| ||||
Sbjct: 2321 agttcaaaaaagtcatactgttcttttcatctttaatgaaggtcaatc-tttgtagggtg 2263
Query: 884 cttagcttgaacccctgagcttgctttgaa 913
||||||||||||||||||||||||||||||
Sbjct: 2262 cttagcttgaacccctgagcttgctttgaa 2233
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8335
Number of Sequences: 1807
Number of extensions: 8335
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 2
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)