BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZE11FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1588 1612 0.0
>3x_Contig1588
Length = 14692
Score = 1612 bits (813), Expect = 0.0
Identities = 864/875 (98%), Gaps = 6/875 (0%)
Strand = Plus / Plus
Query: 88 ttccattggctttttgttacccaatgtttttggttcaatggcagcattaaatactggtgg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8555 ttccattggctttttgttacccaatgtttttggttcaatggcagcattaaatactggtgg 8614
Query: 148 agggatctctattgggtttatcttcaatgtgagctctacgttcttatcaaaagaacgtaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8615 agggatctctattgggtttatcttcaatgtgagctctacgttcttatcaaaagaacgtaa 8674
Query: 208 cccatctttcttgtttacatgagtaacaatagtgtcgccagttctgatatgttccgaaac 267
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8675 cccatctttcttggttacatgagtaacaatagtgtcgccagttctgatatgttccgaaac 8734
Query: 268 attgcttcctgtaagaacaccaatatcacctggatatagttcgttgacttcttcgggaac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8735 attgcttcctgtaagaacaccaatatcacctggatatagttcgttgacttcttcgggaac 8794
Query: 328 gttagcatgcatcctaactagtttaccaatcttgaatttggtcccagttgtggtgttgta 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8795 gttagcatgcatcctaactagtttaccaatcttgaatttggtcccagttgtggtgttgta 8854
Query: 388 gacagtatggttagaacgtaaaactcctgaatacactctgataaagatcatggtacctct 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8855 gacagtatggttagaacgtaaaactcctgaatacactctgataaagatcatggtacctct 8914
Query: 448 aattgcgtctgtaatgactttaaaggccaaagcgacacacaggtttgggtttttgttcaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8915 aattgcgtctgtaatgactttaaaggccaaagcgacacacaggtttgggtttttgttcaa 8974
Query: 508 taccaatccagttaaagggttttgcgtgattggcacgttcttgtggttcaattctggagg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8975 taccaatccagttaaagggttttgcgtgattggcacgttcttgtggttcaattctggagg 9034
Query: 568 tcttgcttctgaaggagatggaaggtagtttgcaatggcatcgagcaaaggctgcacacc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9035 tcttgcttctgaaggagatggaaggtagtttgcaatggcatcgagcaaaggctgcacacc 9094
Query: 628 gatatttctaaaagatgcaccacaaagaactggcgttgcacttaaagagatcgtggcttt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9095 gatatttctaaaagatgcaccacaaagaactggcgttgcacttaaagagatcgtggcttt 9154
Query: 688 cctgatagatgcattcaacacttctggtgaaacatttaggtactctccatcagcatcatt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9155 cctgatagatgcattcaacacttctggtgaaacatttaggtactctccatcagcatcatt 9214
Query: 748 gaaaaaatgttccacaatagattcatcagtctcaccaagagtttccaccaatgctttctc 807
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 9215 gaaaaaatgttccacaatagattcatcagtctcaccaagagtttccaccaatgc-ttctc 9273
Query: 808 tcnctct-accaaatattcataacagtcatgattttcatcgacatcagtgacatttatct 866
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9274 ttcctctaaccaaatattcataacagtcatgattttcatcgacatcagtgacatttatct 9333
Query: 867 tgtctggatcattggtgntcccagatt-actgtttcccatatattaaatc--acacacca 923
||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 9334 tgtctggatcattggtg-tcccagattaactgtttcccatatattaaatccaacacacca 9392
Query: 924 ctgaactttgactcattcgttacagaatctacttg 958
|||||||||||||||||||| |||| |||||||||
Sbjct: 9393 ctgaactttgactcattcgtcacaggatctacttg 9427
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6246
Number of Sequences: 1807
Number of extensions: 6246
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)