BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZE11RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1319 1643 0.0
>3x_Contig1319
Length = 7600
Score = 1643 bits (829), Expect = 0.0
Identities = 880/892 (98%), Gaps = 4/892 (0%)
Strand = Plus / Plus
Query: 49 tttaacttttttaaattttttttgtacccctcggtacctgcatgcctttctgccgcaata 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4314 tttaacttttttaaattttttttgtacccctcggtacctgcatgcctttctgccgcaata 4373
Query: 109 tctgcactaaacgacataaaaggaagaagaccgttttttgtggcaagtacgacgaaacaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4374 tctgcactaaacgacataaaaggaagaagaccgttttttgtggcaagtacgacgaaacaa 4433
Query: 169 gtgaaaaggcattaggtaactaagggaactgggtcaattcgtatagtaagtcatgctcta 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4434 gtgaaaaggcattaggtaactaagggaactgggtcaattcgtatagtaagtcatgctcta 4493
Query: 229 gaagatttacgggctgctggaaatgtcaacattctagaacttcgccgcagtcccaaaaaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4494 gaagatttacgggctgctggaaatgtcaacattctagaacttcgccgcagtcccaaaaaa 4553
Query: 289 aaaaggcgtaatggtaattgaagaagaaaatcttcttggagatcccttgtacgcaggatt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4554 aaaaggcgtaatggtaattgaagaagaaaatcttcttggagatcccttgtacgcaggatt 4613
Query: 349 ggacaagaactttaaggaattggagctgcctatttttccttttttttcacctctaagtgg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4614 ggacaagaactttaaggaattggagctgcctatttttccttttttttcacctctaagtgg 4673
Query: 409 catggaaatcagtgtactgtgagctatttcattacgtgcaaacggaaagcggtgcccttt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4674 catggaaatcagtgtactgtgagctatttcattacgtgcaaacggaaagcggtgcccttt 4733
Query: 469 tcgaatctacgggttaagtccgccccccgcacccctctctctccctcaggctcctttttt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4734 tcgaatctacgggttaagtccgccccccgcacccctctctctccctcaggctcctttttt 4793
Query: 529 tgagtcgtacgacatgtcaaaacggatacaaaaatggcaaacgactaatttttctagcaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4794 tgagtcgtacgacatgtcaaaacggatacaaaaatggcaaacgactaatttttctagcaa 4853
Query: 589 gaatatgtttccgcattagtatgtgtcaatatcagttgacagaacctatataagtattct 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4854 gaatatgtttccgcattagtatgtgtcaatatcagttgacagaacctatataagtattct 4913
Query: 649 gtggcatttcaggatggtttttttttttcagtgtaaagccttttagaagaataacatatc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4914 gtggcatttcaggatggtttttttttttcagtgtaaagccttttagaagaataacatatc 4973
Query: 709 caatggcaggtacctaagggagtactgcaacaacgagatttgagaacggattacagcaat 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4974 caatggcaggtacctaagggagtactgcaacaacgagatttgagaacggattacagcaat 5033
Query: 769 ttggttcgataagctaaggaatgggatattttcaacctgttggtagtgtcgctggaggtg 828
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5034 tcggttcgataagctaaggaatgggatattttcaacctgttggtagtgtcgctggaggtg 5093
Query: 829 aagaaatct-tgatgagatcantgacgttgattggattca-tttgcaaacgtattctcat 886
||||||||| ||||||||||| ||||||||| |||||||| || |||||||||| |||||
Sbjct: 5094 aagaaatctatgatgagatcaatgacgttga-tggattcagttggcaaacgtatcctcat 5152
Query: 887 gcgaa-catgatagcgcacttggggatgcacttgccaaaaatgttataacaa 937
||||| |||||||||||||||||| |||||||||| |||| || ||||||||
Sbjct: 5153 gcgaaccatgatagcgcacttgggaatgcacttgcgaaaagtggtataacaa 5204
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,638
Number of Sequences: 1807
Number of extensions: 13638
Number of successful extensions: 99
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)