BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZE12RM1.SCF screened BAC_end
(895 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1374 1473 0.0
>3x_Contig1374
Length = 8985
Score = 1473 bits (743), Expect = 0.0
Identities = 814/831 (97%), Gaps = 5/831 (0%)
Strand = Plus / Minus
Query: 66 acacatataaatagacacataataagtttgttccagatactcatcattcccactagctct 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6211 acacatataaatagacacataataagtttgttccagatactcatcattcccactagctct 6152
Query: 126 tcgtgcgggccagtgcatatctttgtcatttggcgtcatgtgacttccttggcgtcacat 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6151 tcgtgcgggccagtgcatatctttgtcatttggcgtcatgtgacttccttggcgtcacat 6092
Query: 186 tatctaaatcgcagtttttatcaaaattcaaattgacgcgttttgaaacaagaatcagat 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6091 tatctaaatcgcagtttttatcaaaattcaaattgacgcgttttgaaacaagaatcagat 6032
Query: 246 caaattcgatgagtgctcgaactgacactgtcgagacaatcaacaggacaaacgccaagg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6031 caaattcgatgagtgctcgaactgacactgtcgagacaatcaacaggacaaacgccaagg 5972
Query: 306 gtttgtgacggtctctgctagtgcaatttcaactcatattaaccgctaactttgacatgc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5971 gtttgtgacggtctctgctagtgcaatttcaactcatattaaccgctaactttgacatgc 5912
Query: 366 catccttagttgacgccgttgagcctggctcttccactgtaccatcgtcatcgactaccc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5911 catccttagttgacgccgttgagcctggctcttccactgtaccatcgtcatcgactaccc 5852
Query: 426 catatggaggtgacactcctccttcaaattatggacctagttcatcagatatgcaatact 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5851 catatggaggtgacactcctccttcaaattatggacctagttcatcagatatgcaatact 5792
Query: 486 actatcaacatctgtatccttttaagcagatatttcaatggctgaaccattcacctaaac 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5791 actatcaacatctgtatccttttaagcagatatttcaatggctgaaccattcacctaaac 5732
Query: 546 caggccgtgatatcatcaatagagaattcgcgatggcgttcagatctggtgcatacaaaa 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5731 caggccgtgatatcatcaatagagaattcgcgatggcgttcagatctggtgcatacaaaa 5672
Query: 606 gatataattcgttcaacagcgtacaggagttcaaagtacagatccagaaggctaatccag 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5671 gatataattcgttcaacagcgtacaggagttcaaagtacagatccagaaggctaatccag 5612
Query: 666 atagatttgagatcggtgcagtgtacaatataccgccaagggagcgcgactctttacttt 725
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5611 atagatttgagatcggtgcagtgtacaataaaccgccaagggagcgcgactctttactta 5552
Query: 726 agactgagatgaaaccgatggagaaagaatta-ttttcgattatcgatatggatgattat 784
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 5551 agactgagatgaaaccgatggagaaagaattagttttcga-tatcgatatggatgattat 5493
Query: 785 gatagttatagaacatgttgtttctgggcacaagtgtgtccc-agtgtttgcactttatt 843
|||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||
Sbjct: 5492 gatagttatagaacatgttgttctggggcacaagtgtgtcccaagtgttggcactttatt 5433
Query: 844 aaa-tagctttgaaagtattc-atgcatctttgggaaagaatttcggtttt 892
||| ||||| |||||||| || || ||||||||| ||| |||||||||||
Sbjct: 5432 aaattagctatgaaagtaatcaattcatctttggaaaatgatttcggtttt 5382
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6073
Number of Sequences: 1807
Number of extensions: 6073
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)