BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZF01FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1589 1441 0.0
>3x_Contig1589
Length = 10239
Score = 1441 bits (727), Expect = 0.0
Identities = 765/775 (98%), Gaps = 2/775 (0%)
Strand = Plus / Minus
Query: 85 aaagaaactcaaaggttccacataatagaattcttggaagaagaactgctcatttgtttc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 aaagaaactcaaaggttccacataatagaattcttggaagaagaactgctcatttgtttc 944
Query: 145 cgcctccgtgcagttctctacacagattctccttagcttgacatacttagcaatatcctc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 cgcctccgtgcagttctctacacagattctccttagcttgacatacttagcaatatcctc 884
Query: 205 aatcatggagtcttttggaatctgcatctctaataccctaacaaagatctccgttccata 264
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 aatcatggagtcatttggaatctgcatctctaataccctaacaaagatctccgttccata 824
Query: 265 ttttccaagctccctgcagctgcccttgtctaagtgagatagaatcaataagacatccaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 ttttccaagctccctgcagctgcccttgtctaagtgagatagaatcaataagacatccaa 764
Query: 325 ttttaaggaaagatagtgtttgtagtctatgatagcatcaaacaagtccctgtgatcttt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ttttaaggaaagatagtgtttgtagtctatgatagcatcaaacaagtccctgtgatcttt 704
Query: 385 gtagaagttgaatttggcactttggtcaccgatgaggcccttgcgaagctccaaaagcac 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gtagaagttgaatttggcactttggtcaccgatgaggcccttgcgaagctccaaaagcac 644
Query: 445 ctgcttcgtgactctctgacgttgctgagtaaccattgttgtcttattttgcactctggc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ctgcttcgtgactctctgacgttgctgagtaaccattgttgtcttattttgcactctggc 584
Query: 505 caccgcgcggttgtcttttgaagacacccttattcactctttcacaggttcgaactatgt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 caccgcgcggttgtcttttgaagacacccttattcactctttcacaggttcgaactatgt 524
Query: 565 caaatcccttaaccgtgaatgtagatatatgatggaatagcgttcttgggcaaaactaca 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 caaatcccttaaccgtgaatgtagatatatgatggaatagcgttcttgggcaaaactaca 464
Query: 625 aataaaggcagaaaggatacaacttatggtgcgatctcactagtcgggggtgttaggata 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aataaaggcagaaaggatacaacttatggtgcgatctcactagtcgggggtgttaggata 404
Query: 685 gacggatggtactaggtaagcgattgatatgtgtatttacgtattttgctacgactatga 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gacggatggtactaggtaagcgattgatatgtgtatttacgtattttgctacgactatga 344
Query: 745 ggagagataggaggttatttgcttacggtcacgtttattg-acgtgatacgattaacgaa 803
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 343 ggagagataggaggttatttgcttacggtcacgtttattgcacgtgatacgataaacgaa 284
Query: 804 cttgcataaattctgg-atgggtaccctacgtcaggtttgaatttccatgactat 857
| ||||||||| |||| |||||||| ||||||| ||||||| ||||||||||||
Sbjct: 283 catgcataaatactggaatgggtacactacgtccagtttgaagttccatgactat 229
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4919
Number of Sequences: 1807
Number of extensions: 4919
Number of successful extensions: 19
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)