BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZF01RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1623 1554 0.0
>3x_Contig1623
Length = 14379
Score = 1554 bits (784), Expect = 0.0
Identities = 860/880 (97%), Gaps = 4/880 (0%)
Strand = Plus / Plus
Query: 39 acaggctaacaacatcgcttatactgcgaaacctctgcctttacatatggatttgctata 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5132 acaggctaacaacatcgcttatactgcgaaacctctgcctttacatatggatttgctata 5191
Query: 99 tttggagaatattccaggttggcaattgttgcattgtatcaagaatagcgaaggtttgga 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5192 tttggagaatattccaggttggcaattgttgcattgtatcaagaatagcgaaggtttgga 5251
Query: 159 agagaacggacagaactacttcgttgactcattgggagcgttgaactacattaaaaataa 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5252 agagaacggacagaactacttcgttgactcattgggagcgttgaactacattaaaaataa 5311
Query: 219 ggatcccagtgtattaaaggcattggaaacgattcctatcacttatcattatagaagaga 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5312 ggatcccagtgtattaaaggcattggaaacgattcctatcacttatcattatagaagaga 5371
Query: 279 tgataaaaggtactaccagcaaagacctttagtagagcacaagaagtatgaaacagtggt 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5372 tgataaaaggtactaccagcaaagacctttagtagagcacaagaagtatgaaacagtggt 5431
Query: 339 caattattcaccaccattccaaggaccattcaatctcaaagatatcactgatattccact 398
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5432 caattattcaccaccattccaaggaccattcaatctcaaagatatcactgatattccaat 5491
Query: 399 cttgaaccagttcaagaaaggtttatacatgttcgaagagtacattaacgatccgaagaa 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5492 cttgaaccagttcaagaaaggtttatacatgttcgaagagtacattaacgatccgaagaa 5551
Query: 459 ccaattccagatcaaattaccggagaattcctgtgtcatcttccacaacagaagaatttt 518
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 5552 ccaattccagataaaattaccggagaattcctgtgtcatctgccacaacagaagaatttt 5611
Query: 519 gcatgctaggagacaatttgacggtgagagatggttaaagggttgctatttggatgctga 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5612 gcatgctaggagacaatttgacggtgagagatggttaaagggttgctatttggatgctga 5671
Query: 579 tacgttctcatcgaaattgtcgtatctatatgaaaagtttaattagtagtaagtataatt 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5672 tacgttctcatcgaaattgtcgtatctatatgaaaagtttaattagtagtaagtataatt 5731
Query: 639 aaatgaatgtcaactcttaccagccactttcacaaaagatccctggaacgaatcatgcta 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5732 aaatgaatgtcaactcttaccagccactttcacaaaagatccctggaacgaatcaagcta 5791
Query: 699 agcatctcaccatgagtctcagaacgttaatgggcgaatgctattcgagaatgaagttga 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5792 agcatctcaccatgagtctcagaacgttaatgggcgaatgctattcgagaatgaagttga 5851
Query: 759 atgaaaggatgatacctgaatcccgagtcgttgagttcagcgaagtggaatctgaagaag 818
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5852 aggaaaggatgatacctgaatcccgagtcgttgagttcagcgaagtggaatctgaagaag 5911
Query: 819 agtgttcagc-gcaaattacaaacattatgaggttcattatactatcgttggaggtacat 877
|||| ||||| |||||| ||||||| |||||||||||| | |||| ||||| ||| ||||
Sbjct: 5912 agtg-tcagcggcaaataacaaacaatatgaggttcatcagactagcgttgaaggaacat 5970
Query: 878 gcaattccca-catcggggttgttttatggcagtattacc 916
||||| |||| || || || ||||| ||||||||||||||
Sbjct: 5971 gcaatccccatcaccgtgg-tgtttaatggcagtattacc 6009
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6529
Number of Sequences: 1807
Number of extensions: 6529
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)