BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZF03FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1463 1596 0.0
>3x_Contig1463
Length = 9363
Score = 1596 bits (805), Expect = 0.0
Identities = 847/859 (98%), Gaps = 2/859 (0%)
Strand = Plus / Plus
Query: 86 tcaccaagtggaggtagtgctgttcccggtgcaggaaacatgaccggaggtgttaatgat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 tcaccaagtggaggtagtgctgttcccggtgcaggaaacatgaccggaggtgttaatgat 1826
Query: 146 tctgccatcccaggttctgacctgatgatgcattatccccaacagtatatgaaccataat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1827 tctgccatcccaggttctgacctgatgatgcattatccccaacagtatatgaaccataat 1886
Query: 206 gggcaaaggctt-tgttttggatgaatccggatttgaattctagtgccatcgacgacacc 264
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1887 gggcaaaggccaatgttctggatgaatccggatttgaattctagtgccatcgacgacacc 1946
Query: 265 actgcaggcgaagatccgcagaatcaggattcctttgtgcgcggtgcatcattcacttta 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 actgcaggcgaagatccgcagaatcaggattcctttgtgcgcggtgcatcattcacttta 2006
Query: 325 gaatcttctgaacaggggaatgatgccaaggtgccaggtgctaacacttctagaagacaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 gaatcttctgaacaggggaatgatgccaaggtgccaggtgctaacacttctagaagacaa 2066
Query: 385 actttccatgcagtgtcagctactgacttgttgaacaattctacttccagtcccactgaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2067 actttccatgcagtgtcagctactgacttgttgaacaattctacttccagtcccactgaa 2126
Query: 445 acgacggatgccactggtaccaatgcatcagcaacatcacccgaagcttctgcctcgaaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2127 acgacggatgccactggtaccaatgcatcagcaacatcacccgaagcttctgcctcgaaa 2186
Query: 505 aaagagatgcaggatcgtgtttatcctcaagctgctgcttacccttacaccggtgcattg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2187 aaagagatgcaggatcgtgtttatcctcaagctgctgcttacccttacaccggtgcattg 2246
Query: 565 ctgcaaccaaatcctgtactatctggccatccactgggtcatcatccccatcctatcggt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 ctgcaaccaaatcctgtactatctggccatccactgggtcatcatccccatcctatcggt 2306
Query: 625 tccccattccctggttacggttttaatacagctttctctcctgtcccgggccctactaac 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2307 tccccattccctggttacggttttaatacagctttctctcctgtcccgggccctactaac 2366
Query: 685 acgttgaatgcaggttctccagccatctccgcagatggcaaagaagcaaacagcagcggc 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2367 acgttgaatgcaggttctccagccatctccgcagatggcaaagaagcaaacagcagcggc 2426
Query: 745 gatccaagtggccaatctaaccgtcatgtacactctggaactaattccccaggattgagt 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2427 gatccaagtggccaatctaaccgtcatgtacactctggaactaattccccaggattgagt 2486
Query: 805 caacctgntagtctgccaatgtcangacctaacccgtggatgtttgctgctcctcacggt 864
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2487 caacctggtagtctgccaatgtcaggacctaacccgtggatgtttgctgctcctcacggt 2546
Query: 865 attccttactttctggttccacacccttatcatccgggtcacgcatgccctccagctggc 924
| |||| |||| ||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 2547 agtcctaacttcctggttccacaccctcatcatccgggtcacgcaggccctccagctggc 2606
Query: 925 catcaaaga-cacagagca 942
||||||||| |||||||||
Sbjct: 2607 catcaaagaccacagagca 2625
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4263
Number of Sequences: 1807
Number of extensions: 4263
Number of successful extensions: 19
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)