BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZF03RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1641 0.0
>3x_Contig1770
Length = 29267
Score = 1641 bits (828), Expect = 0.0
Identities = 887/900 (98%), Gaps = 5/900 (0%)
Strand = Plus / Minus
Query: 48 taacctctacc-tatctgctttttaggatctaccatctggcagctcctctggtcgttatt 106
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 19408 taacctctaccatatctgctctttaggatctaccatctggcagctcctctggtcgttatt 19349
Query: 107 ctcaattgcacatagatagtcaatccagagttggctgtcatcgttccggcttggtagtta 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19348 ctcaattgcacatagatagtcaatccagagttggctgtcatcgttccggcttggtagtta 19289
Query: 167 tactggttcccgcagtttctatacttaagtgtcaaagattgcttcaaaagagtgtgtcgg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19288 tactggttcccgcagtttctatacttaagtgtcaaagattgcttcaaaagagtgtgtcgg 19229
Query: 227 acatattaccatagtaccaccaagacaggaacgcgactcggaaactcagtatgattatgt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19228 acatattaccatagtaccaccaagacaggaacgcgactcggaaactcagtatgattatgt 19169
Query: 287 tccgttcactatcagtgacacctgtttggaaggctggtttaagcttatcacatcgttcga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19168 tccgttcactatcagtgacacctgtttggaaggctggtttaagcttatcacatcgttcga 19109
Query: 347 ttcctattaactccagattatcatcggtgaggaattatatctcaatcggatgtgctaata 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19108 ttcctattaactccagattatcatcggtgaggaattatatctcaatcggatgtgctaata 19049
Query: 407 aaacgggcagcaggcttcttcgttccgcaggggtatcaagtcagtacaaagatttcagga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19048 aaacgggcagcaggcttcttcgttccgcaggggtatcaagtcagtacaaagatttcagga 18989
Query: 467 ggtttaacagttccagtaatggtaatggtaccgacaagaatgcttctgttgcaccgaaaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18988 ggtttaacagttccagtaatggtaatggtaccgacaagaatgcttctgttgcaccgaaaa 18929
Query: 527 ctgaggtcaagaagattgttcccccaaaaccatcaactaatggtaaatcaaagactccga 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18928 ctgaggtcaagaagattgttcccccaaaaccatcaactaatggtaaatcaaagactccga 18869
Query: 587 ccatttcggaattgcgtattatgaaagatctatttaagtatatctggcccagcggtgata 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18868 ccatttcggaattgcgtattatgaaagatctatttaagtatatctggcccagcggtgata 18809
Query: 647 acaaggtcaaaattagagtgttaattgcattggcgctattgataggtgccaagttgttga 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18808 acaaggtcaaaattagagtgttaattgcattggcgctattgataggtgccaagttgttga 18749
Query: 707 atgttcaagttccttttttcttcaaacagaccatcgattcgatgaatattgaatggggtc 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18748 atgttcaagttccttttttcttcaaacagaccatcgattcgatgaatattgaatggggtc 18689
Query: 767 cagatgtggctactgtgctcccagttgcgataacaatgactattctctcgtacggtgctg 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18688 cagatgtggctactgtgctcccagttgcgataacaatgactattctctcgtacggtgctg 18629
Query: 827 ctagattcggtgctgttatgtttggttgagttgtaggaacgcagttttcgcttagggtgc 886
||||||||||||||||||||||||| ||||||| ||||||||||||||||| || ||||
Sbjct: 18628 ctagattcggtgctgttatgtttgg-tgagttg-aggaacgcagttttcgc-taaggtgg 18572
Query: 887 ccaaaaacgctatcaggaaagtctcatttacaacgtttcaacattttaatgaagttagat 946
|| ||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct: 18571 cccaaaacgctatcaggaaagtctcattacaaacgttccaaca-tttaatgaagttagat 18513
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5663
Number of Sequences: 1807
Number of extensions: 5663
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)