BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZF05FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1186 765 0.0
>3x_Contig1186
Length = 4633
Score = 765 bits (386), Expect = 0.0
Identities = 450/466 (96%), Gaps = 4/466 (0%)
Strand = Plus / Plus
Query: 166 ttactgatgcaattaa-ttcttgacgttatctgaagatgtgagactacgcagaaaattct 224
|||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1016 ttactgatgcaaagaacttcttgacgttatctgaagaggtgagactacgcagaaaattct 1075
Query: 225 tgaagccagtgaaaccagaaacagaattgaagaaattggaagaaccactcaaacctttca 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1076 tgaagccagtgaaaccagaaacagaattgaagaaattggaagaaccactcaaaccttcca 1135
Query: 285 agaaaaatctaaccaccagacgttacaactacgaacaaaacacgatagatgtcattacaa 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1136 agaaaaatctaaccaccagacgttacaactacgaacaaaacacgatagatgtcattacaa 1195
Query: 345 gaccaaagaccgatttcttgagcaaattgtaaatcttccccaagtcgttacgtaacaaac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1196 gaccaaagaccgatttcttgagcaaattgtaaatcttccccaagtcgttacgtaacaaac 1255
Query: 405 catttagagccttgtacatattaacaaatgaaccacaacaatcatcatagtttaaactga 464
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1256 catttagagccttgtacatattaacaaaagaaccacaacaatcatcatagtttaaactga 1315
Query: 465 taaaaacgaaagtttttttagagactatatattatttggaaaggctaattccatattata 524
||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 1316 aaaaaacgaaag-ttttttagagactatatatcatttggaaaggttaattccatattata 1374
Query: 525 tcgttaacgtatttaatttgtctatatgtgtgagacaaaattcaaaacatactcttacat 584
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1375 tcgttaacgtatttaatttgtctatatgtgtgagacaaaatccaaaacatactcttacat 1434
Query: 585 ttctatttcttttgattattggattggtttgagggacaaaactatg 630
| |||||| |||||| |||||||||| ||||||| |||||||||||
Sbjct: 1435 tactattt-ttttga-tattggattgttttgaggtacaaaactatg 1478
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,080
Number of Sequences: 1807
Number of extensions: 10080
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)