BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZF07FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1224 644 0.0
>3x_Contig1224
Length = 5948
Score = 644 bits (325), Expect = 0.0
Identities = 428/450 (95%), Gaps = 11/450 (2%)
Strand = Plus / Plus
Query: 441 atgcagggtgtgtattcatggaagaaatgcatctatatacactaatcatgtgacttacaa 500
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 atgcagggtgtgtatt-atggaagaaatgcatctatatacactaatcatgtgacttacaa 61
Query: 501 aatgaaattaccagtagaatatctttgagtagtattaagtgttagaaactctcggtttat 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 aatgaaattaccagtagaatatctttgagtagtattaagtgttagaaactctcggtttat 121
Query: 561 tgaacattgctctcatcatattgtgatatgccttgagccctatctccgaacgcaatgcta 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tgaacattgctctcatcatattgtgatatgccttgagccctatctccgaacgcaatgcta 181
Query: 621 tactcatttctggttgtatgagaattctggttgtttctctcaagttgttcgaatcgat-a 679
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 182 tactcatttctggttgtatgagaattctggttgtttctctcaagttgtcggaatcgataa 241
Query: 680 ccacaagttggttcaagatcagaggcanagaanaaacaactgtgattattgctaagataa 739
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 242 ccacaagttggttcaagatcagaggcaaagaaaaaacaactgtgattattgctaagataa 301
Query: 740 tgataaacaccaacgcatatatgtttcgcattgaatttgctttttacccttcttctttaa 799
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||
Sbjct: 302 tgataaacaccaacgcatatatg-ttcgcattgaatttgc-ttttacccttcttcttaaa 359
Query: 800 aataaatagtcttggcgtcaatgttccgcctttctttcaaaatagcatttaaggaattgc 859
||| ||||| ||||||||||| |||||||||| | |||||||||| |||||||| |||
Sbjct: 360 aat-aataggtctggcgtcaatg-tccgcctttc-tccaaaatagca-ttaaggaa-tgc 414
Query: 860 caagtattcacattttgggaatcatcaaaa 889
|||||| ||||||| |||||||||||||
Sbjct: 415 aaagtatccacattt--ggaatcatcaaaa 442
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6786
Number of Sequences: 1807
Number of extensions: 6786
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)