BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZF08FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig213 1608 0.0
>3x_Contig213
Length = 1583
Score = 1608 bits (811), Expect = 0.0
Identities = 854/864 (98%), Gaps = 4/864 (0%)
Strand = Plus / Plus
Query: 86 tgtatgtagattctttggaaaggtccttggtttgtatttgggaaataggatcatttaatg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tgtatgtagattctttggaaaggtccttggtttgtatttgggaaataggatcatttaatg 767
Query: 146 cagttcccgttattggagtttcgtcattttcttctagttccataattcgatgaaatattt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 cagttcccgttattggagtttcgtcattttcttctagttccataattcgatgaaatattt 827
Query: 206 ggtgtattaattttccccttgagtctatttattcaaaatacagaccagccaatgtatata 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ggtgtattaattttccccttgagtctatttattcaaaatacagaccagccaatgtatata 887
Query: 266 ttgaccaagtactaattaaaatcccttcatcagtaattttgtagcttgcatcattatgtt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 ttgaccaagtactaattaaaatcccttcatcagtaattttgtagcttgcatcattatgtt 947
Query: 326 ttcccataaaacaacaattttctgaaggaattcctgtttagtttccaaaaatatgataag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 ttcccataaaacaacaattttctgaaggaattcctgtttagtttccaaaaatatgataag 1007
Query: 386 gaatttacaaaaaaatcacttaatccgtccagagacaggaaaagaaaaagtgagaaagcc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 gaatttacaaaaaaatcacttaatccgtccagagacaggaaaagaaaaagtgagaaagcc 1067
Query: 446 tgtcagttatacttggaatagactttaaaacattaatatacagaagaaaataaagactaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 tgtcagttatacttggaatagactttaaaacattaatatacagaagaaaataaagactaa 1127
Query: 506 cgttataaatgatgaagtattagttgaaatgatgggataaaccggttttaacatcctaaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1128 cgttataaatgatgaagtattagttgaaatgatgggataaaccggttttaacatcctaaa 1187
Query: 566 aaaaaaaggcacttcttagaatatcatttctttggtggattttaccggcacatatggttt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1188 aaaaaaaggcacttcttagaatatcatttctttggtggattttaccggcacatatggttt 1247
Query: 626 tgttgtatcaattgagaaaggacacaagatgtctgatgtatcttctattgataacgttaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1248 tgttgtatcaattgagaaaggacacaagatgtctgatgtatcttctattgataacgttaa 1307
Query: 686 atgaaatttacaattacaagagcaggatgaaagtgaatgtggcaataactggtatagata 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1308 atgaaatttacaattacaagagcaggatgaaagtgaatgtggcaataactggtatagata 1367
Query: 746 tcttgataaagccagcaataaagggaacanaaagaagtgaaacatgattgtaaataaaat 805
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1368 tcttgataaagccagcaataaagggaacaaaaagaagtgaaacatgattgtaaataaaat 1427
Query: 806 tagtaccattacactttcctgctgnatgtttggngtggcgttaccccttgaaattt-aaa 864
|||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct: 1428 tagtacaattacactttcctgctggatgtttgg-gtggcgttaccccttgaaatttcaaa 1486
Query: 865 tcttgtgacagaagggatgtggtcacttgggaacttatcgntagggaaccc-ataaactt 923
|||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 1487 tcttgtgacaagagggatgtggtcacttgggaacttatcgttagggaacccaataaactt 1546
Query: 924 gg-tgcatactcctcgtcgatctt 946
|| |||||||||||||||||||||
Sbjct: 1547 ggatgcatactcctcgtcgatctt 1570
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9335
Number of Sequences: 1807
Number of extensions: 9335
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)