BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZF08RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1709 1639 0.0
>3x_Contig1709
Length = 16948
Score = 1639 bits (827), Expect = 0.0
Identities = 875/887 (98%), Gaps = 3/887 (0%)
Strand = Plus / Plus
Query: 48 taagaggtttgggtggtattttattgaaccctgacacaggtttgaggtttaccaatgaac 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 8827 taagaggtttgggtggtatcttattgaaccctgacacaggtttgaggtttaccaatgaac 8886
Query: 108 taaacactcgtgacactgttactgcagctattcaatccaaatgcaaatcacaaactgcct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8887 taaacactcgtgacactgttactgcagctattcaatccaaatgcaaatcacaaactgcct 8946
Query: 168 ggatggtcatgagtgaggatctatatggaaattataagccaaatcttgacttctacatgt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8947 ggatggtcatgagtgaggatctatatggaaattataagccaaatcttgacttctacatgt 9006
Query: 228 tcaagaaattagtaacaaaaacaactgttgcagattttgccaaagatttgccaattgatg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9007 tcaagaaattagtaacaaaaacaactgttgcagattttgccaaagatttgccaattgatg 9066
Query: 288 ccaataccttgatctctgaattggtcacttattcggacatttcaaaggaagaccaatttg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9067 ccaataccttgatctctgaattggtcacttattcggacatttcaaaggaagaccaatttg 9126
Query: 348 gtcgtactcatagggaaaatcaatttgcatccactctttcggaggattctaccattttcg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9127 gtcgtactcatagggaaaatcaatttgcatccactctttcggaggattctaccattttcg 9186
Query: 408 tgggcaaaatcactccagtagttcatttcaccatgggtggtgcaaagattgacgaacagt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9187 tgggcaaaatcactccagtagttcatttcaccatgggtggtgcaaagattgacgaacagt 9246
Query: 468 ctcgtgtgctaaatgctgaaggtaatccgattgctactggaatttacgccgccggtgaag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9247 ctcgtgtgctaaatgctgaaggtaatccgattgctactggaatttacgccgccggtgaag 9306
Query: 528 tttccggtggcgttcacggtgccaacagattaggtggttcctccttgttagaatgtgtcg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9307 tttccggtggcgttcacggtgccaacagattaggtggttcctccttgttagaatgtgtcg 9366
Query: 588 tatttggcagacaggctgctagatcaattaaggctagtttgtgaatgtttggcgactgca 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9367 tatttggcagacaggctgctagatcaattaaggctagtttgtgaatgtttggcgactgca 9426
Query: 648 gaaaatgagtctcgcaatgaaggagatcttcaacaactacccgtggtttatagataacca 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9427 gaaaatgagtctcgcaatgaaggagatcttcaacaactacccgtggtttatagataacca 9486
Query: 708 gaacttactatgatacgttgtatatcttcctctgtatcaaatatatgtatgtatgtatgt 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9487 gaacttactatgatacgttgtatatcttcctctgtatcaaatatatgtatgtatgtatgt 9546
Query: 768 gcatgtatgaatttt-atgaaatggctaaagaactgtacgatgaaagatctgaaaatgaa 826
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 9547 gcatgtatgaattttaatgaaatggctaaagaactgaacgatgaaagatctgaaaatgaa 9606
Query: 827 gtataataatgctagcttcacttcacag-aagatactttgac-aaaggataataattaaa 884
|||||||||||||||||||||||||||| |||||||| ||| |||| ||||||| ||||
Sbjct: 9607 gtataataatgctagcttcacttcacagaaagatactaggacaaaagaataataagtaaa 9666
Query: 885 gtgaacgcttttttaccggggagatacaacttgacagatatgacaac 931
||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 9667 gtggacgctagtttaccggggagatacaacttgacagatatgacaac 9713
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6477
Number of Sequences: 1807
Number of extensions: 6477
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)