BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZF09FM1.SCF screened BAC_end
(983 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1685 1628 0.0
>3x_Contig1685
Length = 14400
Score = 1628 bits (821), Expect = 0.0
Identities = 878/895 (98%), Gaps = 2/895 (0%)
Strand = Plus / Minus
Query: 88 tgccattccagtttaccagtcgatgtttcgacaactcctagttcctttaaatgcgatctt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12018 tgccattccagtttaccagtcgatgtttcgacaactcctagttcctttaaatgcgatctt 11959
Query: 148 tcagatgggtctggcttgaatatccattgtgtcacacggccatcggcattagtcttggca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11958 tcagatgggtctggcttgaatatccattgtgtcacacggccatcggcattagtcttggca 11899
Query: 208 atcgcaaattggttttttctttcaataattgctgtatcattatcagagttaagtgtaagg 267
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11898 atcgcaaattgggactcactttcaataattgctgtatcattatcagagttaagtgtaagg 11839
Query: 268 tgagagagcgtacatacgacactttctgcaggtttgcccgatactgtatccaaaatatga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11838 tgagagagcgtacatacgacactttctgcaggtttgcccgatactgtatccaaaatatga 11779
Query: 328 catgtaagtggaactgacatactggaattccgtttggatttggtttgaatggacaaataa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11778 catgtaagtggaactgacatactggaattccgtttggatttggtttgaatggacaaataa 11719
Query: 388 cgtctatcgaacagctaaccgtccctatatctctctaaagagcatcatacacactttgga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11718 cgtctatcgaacagctaaccgtccctatatctctctaaagagcatcatacacactttgga 11659
Query: 448 tacttattttatgtgtctcgctttatcaacattcttttcctgatggtttaaatagttcga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11658 tacttattttatgtgtctcgctttatcaacattcttttcctgatggtttaaatagttcga 11599
Query: 508 aagtcaatttaacaatatgatttttccaggccttcaaacacggacagaaccgaactcatc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11598 aagtcaatttaacaatatgatttttccaggccttcaaacacggacagaaccgaactcatc 11539
Query: 568 gaagataagagaataatagaaattcgtaacactttcagctggacatcgcaagaggttaag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11538 gaagataagagaataatagaaattcgtaacactttcagctggacatcgcaagaggttaag 11479
Query: 628 tagtgtttgctatatggtgacatggaacatcatgttctcggctatgagacatccaaacac 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11478 tagtgtttgctatatggtgacatggaacatcatgttctcggctatgagacatccaaacac 11419
Query: 688 ggctcacgatatcctgtattcttgactcaattgctgccgacaagcaagtggtatggtaaa 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11418 ggctcacgatatcctgtattcttgactcaattgctgccgacaagcaagtggtatggtaaa 11359
Query: 748 gcaacatcgttaacaattcggagtatttataagaacctagagacttcgaggaaatggaat 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11358 gcaacatcgttaacaattcggagtatttataagaacctagagacttcgaggaaatggaat 11299
Query: 808 actgagtacctttattacaacagcttcattagagacattttcctgtattt-aaccaccca 866
|||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 11298 actgagtaccttatttacaacagctccattagagacattttcctgtatttaaaccaccca 11239
Query: 867 attactagtatttagatatgtggacttgtgggttggatgggaatggnaacttatagnaaa 926
|||||||||||| |||||||||||||||| |||||||||| ||||| ||||||||| |||
Sbjct: 11238 attactagtattaagatatgtggacttgt-ggttggatggaaatggaaacttataggaaa 11180
Query: 927 cgaggatatgccattttggtacattgatgattgctcagatacattactatgccaa 981
|||||||| | |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 11179 cgaggatagggcattttggtacattgatgattgctcagatacaatactatgccaa 11125
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5993
Number of Sequences: 1807
Number of extensions: 5993
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)