BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZF09RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig981 1614 0.0
>3x_Contig981
Length = 3479
Score = 1614 bits (814), Expect = 0.0
Identities = 876/894 (97%), Gaps = 3/894 (0%)
Strand = Plus / Plus
Query: 54 tagaactgaaagttt-taatagtatgctggtttatcttttgtattgatcgcatgaaggag 112
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tagaactgaaagttcataatagtatgctggtttatcttttgtattgatcgcatgaaggag 815
Query: 113 attgtaccaaacgtgattttcagtaacctccagatatttaggtagtgagagctcatcaga 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 attgtaccaaacgtgattttcagtaacctccagatatttaggtagtgagagctcatcaga 875
Query: 173 gaagtcatttgccaagaatatttcaatagatgcatcatattcattgcatttgaacaaaga 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gaagtcatttgccaagaatatttcaatagatgcatcatattcattgcatttgaacaaaga 935
Query: 233 aagagcatatagtagttcttctactggatccttggacacatggtaaggcttagcaacaaa 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 aagagcatatagtagttcttctactggatccttggacacatggtaaggcttagcaacaaa 995
Query: 293 gtgtaggaattgctttgcacaagtcaaatcttcgccgttcaatatgaaatcggaaaaggc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 gtgtaggaattgctttgcacaagtcaaatcttcgccgttcaatatgaaatcggaaaaggc 1055
Query: 353 tcttgtaaatattggaggttcagctgttggagaattcttgacaaaaccaaccattaatgt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 tcttgtaaatattggaggttcagctgttggagaattcttgacaaaaccaaccattaatgt 1115
Query: 413 agtaaagtcggttatatcgctgtaagatttcaattgtgcaccataattgtatttagtaac 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1116 agtaaagtcggttatatcgctgtaagatttcaattgtgcaccataattgtatttagtaac 1175
Query: 473 atgaccgaaggtctcagaaattgccaataatttatctatttgatacacttggagccacaa 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1176 atgaccgaaggtctcagaaattgccaataatttatctatttgatacacttggagccacaa 1235
Query: 533 tgagatattgaagtgcaaggtaattaacttagacaacttctctgcaaaaacttcatagtt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1236 tgagatattgaagtgcaaggtaattaacttagacaacttctctgcaaaaacttcatagtt 1295
Query: 593 gatatccacaatagtgaatactaacaatatatcaatgataaacttatccataatggagag 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1296 gatatccacaatagtgaatactaacaatatatcaatgataaacttatccataatggagag 1355
Query: 653 tgtctgcttcaaggattccatagacaaaacagataagaaaatgtcagtatctaataaatc 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1356 tgtctgcttcaaggattccatagacaaaacagataagaaaatgtcagtatctaataaatc 1415
Query: 713 aataactgaaaaagcacctactttcaaatcacagtgtataaattcggataaaacctncac 772
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1416 aataactgaaaaagcacctactttcaaatcacagtgtataaattcggataaaacctccac 1475
Query: 773 cacatcaatagaatttagaatttccaacaattttgantaattagcactttggaaaccatt 832
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 1476 cacatcaatagaatttagattttccaacaattttgataaattagcactttggaaaccatt 1535
Query: 833 tgttagnacatcttgaaagac-attntaatttttattttcaatgataacgagggatttat 891
|||||| |||||||||||| || ||||||| |||||||||||||||||||||||||
Sbjct: 1536 tgttagacaatcttgaaagacaatggtaattttatttttcaatgataacgagggatttat 1595
Query: 892 tgtaccatttaccatgtctaagaacttctcagaattctta-ttaacgtttcaga 944
|| |||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 1596 tgaaccatttaccatgtctaagaacttctcagatatcttatttaacgtttcaga 1649
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7768
Number of Sequences: 1807
Number of extensions: 7768
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)