BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZF10FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1455 0.0
>3x_Contig1652
Length = 14842
Score = 1455 bits (734), Expect = 0.0
Identities = 754/758 (99%), Gaps = 2/758 (0%)
Strand = Plus / Plus
Query: 91 aatcgtaatcagggtagtatgaaaacaacggagaactgcgagacaaagatctctgcgact 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4833 aatcgtaatcagggtagtatgaaaacaacggagaactgcgagacaaagatctctgcgact 4892
Query: 151 gtgttcaactcagttcagacttataaactagctcatcttgattgaatttaacttttacac 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4893 gtgttcaactcagttcagacttataaactagctcatcttgattgaatttaacttttacac 4952
Query: 211 ttttcagactttaggaaaaaaagaaagttgaagtttaatgagagtcgtattttgtgatta 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4953 ttttcagactttaggaaaaaaagaaagttgaagtttaatgagagtcgtattttgtgatta 5012
Query: 271 atgatgaagttggctgacggttttatagtacaattgataatcggttcgttatgaaactat 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5013 atgatgaagttggctgacggttttatagtacaattgataatcggttcgttatgaaactat 5072
Query: 331 atacatatatatatatatattctatacaggcggacacaattcatgcggaattttcgtctt 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5073 atacatatatatatatatattctatacaggcggacacaattcatgcggaattttcgtctt 5132
Query: 391 gtatagtttttggctgtatttctgcatttgcattgctgtcttcggtctcttcttttaccg 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5133 gtatagtttttggctgtatttctgcatttgcattgctgtcttcggtctcttcttttaccg 5192
Query: 451 gctcgctctctgcgatcactgcttgtcttaggatttctgcgaatgtgtcactgacagtaa 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5193 gctcgctctctgcgatcactgcttgtcttaggatttctgcgaatgtgtcactgacagtaa 5252
Query: 511 ccggttcgggattctttgaagtctttggattaccgttgcacttggctaattcactaccga 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5253 ccggttcgggattctttgaagtctttggattaccgttgcacttggctaattcactaccga 5312
Query: 571 aagcttcaatggcttttctattcgtccagttgttgattgaaatgcgttctgtttctcttt 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5313 aagcttcaatggcttttctattcgtccagttgttgattgaaatgcgttctgtttctcttt 5372
Query: 631 gtaggtttaaaagcttatcaaagctttttttgaggacggtcattttttctgtcacgagat 690
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5373 gtaggtttaaaagcttatcaaagctttttttgaggacggtca-tttttctgtcacgagat 5431
Query: 691 gcacgtaatgatttcctttgcaaccttgacatcttggcaccattttcagtctctttacca 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5432 gcacgtaatgatttcctttgcaaccttgacatcttggcaccattttcagtctctttacca 5491
Query: 751 tccaacgcttttttctttgccaattactcgtcacgctgtgcttcgagttgcttcagtttc 810
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 5492 tccaacgcttttttctttgccaataactcgtcacgctgtgcttcgagttgctccagtttc 5551
Query: 811 agaag-atcttacgagtcttagatgagtcatcaagagc 847
||||| ||||||||||||||||||||||||||||||||
Sbjct: 5552 agaagaatcttacgagtcttagatgagtcatcaagagc 5589
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,324
Number of Sequences: 1807
Number of extensions: 11324
Number of successful extensions: 1531
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)