BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZF11RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1536 1608 0.0
>3x_Contig1536
Length = 11572
Score = 1608 bits (811), Expect = 0.0
Identities = 876/889 (98%), Gaps = 7/889 (0%)
Strand = Plus / Minus
Query: 41 gcttgtaacctcctcgtcgtca-ctaacattttagaagaggtaagtttattagtaaaact 99
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 7262 gcttgtaacctcctcgtcgtcaacaaacattttagaagaggtaagtttattagtaaaact 7203
Query: 100 ggaagggttcgcaattagggtcgtgttgaaaaaagatggtctaggatttacattctcctc 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7202 ggaagggttcgcaattagggtcgtgttgaaaaaagatggtctaggatttacattctcctc 7143
Query: 160 aatattcgaaaggaacagagagtcagcatgactgctatgtttcttcttggaggctttgag 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7142 aatattcgaaaggaacagagagtcagcatgactgctatgtttcttcttggaggctttgag 7083
Query: 220 actgcggctcgcatctatggatgacactttcccatcatagatggatctggctcttttttt 279
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7082 actgcggctcgcatctatggatgacactttcccatcagagatggatctggctcttttttt 7023
Query: 280 gcctgaaacttgcgatttggtcgacctctgcttggtaactttggaagtgttcttcgctcc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7022 gcctgaaacttgcgatttggtcgacctctgcttggtaactttggaagtgttcttcgctcc 6963
Query: 340 agctttgacattggaagggcggccagttttcttaattttcgtcgaatgaatatccgcctt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6962 agctttgacattggaagggcggccagttttcttaattttcgtcgaatgaatatccgcctt 6903
Query: 400 gacctggtccttcttcgaaacgcgccttttcgattttacttccgctagtttatcttcctc 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6902 gacctggtccttcttcgaaacgcgccttttcgattttacttccgctagtttatcttcctc 6843
Query: 460 gtcgctctcaactcttgcaggtttccgacgttctcttagaaatgtcatgggaagaaaata 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6842 gtcgctctcaactcttgcaggtttccgacgttctcttagaaatgtcatgggaagaaaata 6783
Query: 520 ctcactgcgcatatcatacttcatagactcttcaattaaagccatagtactcttcgtcat 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6782 ctcactgcgcatatcatacttcatagactcttcaattaaagccatagtactcttcgtcat 6723
Query: 580 acgcttaccttgagtgtcaccttcattcatgggtgtattatcccttgtattatcccttgt 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6722 acgcttaccttgagtgtcaccttcattcatgggtgtattatcccttgtattatcccttgt 6663
Query: 640 attatcccttgtgctatccaccgaatgcatattggagaacaccgatgcatcagagctcgt 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6662 attatcccttgtgctatccaccgaatgcatattggagaacaccgatgcatcagagctcgt 6603
Query: 700 ggcctcagttgacatctccttcgtatgcgttctcaaacgtaactaanacaaacgaaatta 759
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 6602 ggcctcagttgacatctccttcgtatgcgttctcaaacgtaactaaaacaaacgaaatta 6543
Query: 760 tgaccttatttcatggaacaattgtacatcaatgcaataaccagtggtcaagcaatccgt 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6542 tgaccttatttcatggaacaattgtacatcaatgcaataaccagtggtcaagcaatccgt 6483
Query: 820 tacagagtgaatatgatcgttcc-acacaag-aggtatgttcgttactttctttcttg-t 876
||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| |
Sbjct: 6482 tacagagtgaataggatcgttccaacacaagaaggtatgttcgttactttctttcttgtt 6423
Query: 877 gta-gtgggttggtttggnacttctgtcttttgcctgga-gcttccttt 923
||| ||||||||| |||| |||||||||||||| ||||| |||||||||
Sbjct: 6422 gtatgtgggttgg-ttggtacttctgtcttttgtctggatgcttccttt 6375
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5502
Number of Sequences: 1807
Number of extensions: 5502
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)