BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZG02FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1797 1637 0.0
>3x_Contig1797
Length = 34782
Score = 1637 bits (826), Expect = 0.0
Identities = 841/845 (99%), Gaps = 1/845 (0%)
Strand = Plus / Minus
Query: 88 tcgaagaatatggtagcgcctataattacatccaaaaaattactcgtgcaagtgctaatc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30295 tcgaagaatatggtagcgcctataattacatccaaaaaattactcgtgcaagtgctaatc 30236
Query: 148 agaaaacggcagaggtgttgcattttaaatctcaaagtattaatttaaaaatattaatga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30235 agaaaacggcagaggtgttgcattttaaatctcaaagtattaatttaaaaatattaatga 30176
Query: 208 acaacattagccttgaactttccatggatcctattaaatcaaccctacctcatacacttt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30175 acaacattagccttgaactttccatggatcctattaaatcaaccctacctcatacacttt 30116
Query: 268 ttgatgttgaaaaaatatcattactattaatcagaggcgataaaaaagttcttattggaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30115 ttgatgttgaaaaaatatcattactattaatcagaggcgataaaaaagttcttattggaa 30056
Query: 328 cactgtcgaatctcataataagttcaaaaactaacggctgttttcacgttgaatccttcg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30055 cactgtcgaatctcataataagttcaaaaactaacggctgttttcacgttgaatccttcg 29996
Query: 388 accataagtttggtgcaatcgacataaatacccgcacaaaagctgttctagagtcattac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29995 accataagtttggtgcaatcgacataaatacccgcacaaaagctgttctagagtcattac 29936
Query: 448 atctatttctttctcaagctgaactggaattaatatcttccaatttgattgcattctgtg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29935 atctatttctttctcaagctgaactggaattaatatcttccaatttgattgcattctgtg 29876
Query: 508 gttctatttcgtcatttacaaatcccaatactagaaacaacggccatgaaaatgttacta 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29875 gttctatttcgtcatttacaaatcccaatactagaaacaacggccatgaaaatgttacta 29816
Query: 568 aaaagagcgttagattgttgcattcttctaatgttatgaataaaagggctactctttcaa 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29815 aaaagagcgttagattgttgcattcttctaatgttatgaataaaagggctactctttcaa 29756
Query: 628 acttcgttcttcaggtccataaagctaagatgaccattacaaacactcttgaaaacactt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29755 acttcgttcttcaggtccataaagctaagatgaccattacaaacactcttgaaaacactt 29696
Query: 688 tcggtgacataacaatagaggcaatttcgtgtatactatctcaggaccaaaataagacac 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29695 tcggtgacataacaatagaggcaatttcgtgtatactatctcaggaccaaaataagacac 29636
Query: 748 tctgtggcattgttaaagaagcaaggctacaacggctgtacatgagagaganaaccgaca 807
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 29635 tctgtggcattgttaaagaagcaaggctacaacggctgtacatgagagagaaaaccgaca 29576
Query: 808 ttatatgtaatgtaaaccatgatagaagttaaccacaattgatattaaacattccaaact 867
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 29575 ttatatgtaatgtaaaccatgatagaagtaaaccacaattgatattaaacatgccaaact 29516
Query: 868 ctggaaaaccgaagcttta-ttgaaagggttgggattgtttatcgactcaaaatggagag 926
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 29515 ctggaaaaccgaagctttatttgaaagggttgggattgtttatcgactcaaaatggagag 29456
Query: 927 actta 931
|||||
Sbjct: 29455 actta 29451
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7217
Number of Sequences: 1807
Number of extensions: 7217
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)