BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZG02RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig597 1647 0.0
>3x_Contig597
Length = 2335
Score = 1647 bits (831), Expect = 0.0
Identities = 873/883 (98%), Gaps = 3/883 (0%)
Strand = Plus / Minus
Query: 48 tatgacttcataaacaaatttttaaacatgagacaattgcgtcaaagaaatgcaccagtt 107
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1683 tatgacttcataaacaaattcgaaaacatgagacaattgcgtcaaagaaatgcaccagtt 1624
Query: 108 ttacctagaaagcctctactaaaatctgatattgatatttccaaagatatcgaaaagaca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1623 ttacctagaaagcctctactaaaatctgatattgatatttccaaagatatcgaaaagaca 1564
Query: 168 cactggacagaagttcatggaatggcctttgctagggcatacacagactttactttgcac 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1563 cactggacagaagttcatggaatggcctttgctagggcatacacagactttactttgcac 1504
Query: 228 ttggaccgagtgataaaacttgcaagagaaatcttgggagaagaggcaacataactaata 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1503 ttggaccgagtgataaaacttgcaagagaaatcttgggagaagaggcaacataactaata 1444
Query: 288 taaaaaaaggagtcatcattatgttatggttctattgaaaatgcgcaattcatactattc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1443 taaaaaaaggagtcatcattatgttatggttctattgaaaatgcgcaattcatactattc 1384
Query: 348 aatatttaatttctataatgtacaaaagcagaaaacaatggcattatctgatagcaatcc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1383 aatatttaatttctataatgtacaaaagcagaaaacaatggcattatctgatagcaatcc 1324
Query: 408 ctattttctgatcaattacccagagccagggcattgacttttcttcatagtcaacgtgca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1323 ctattttctgatcaattacccagagccagggcattgacttttcttcatagtcaacgtgca 1264
Query: 468 aataagaccttacagtgtggtctggtctcgtattgcaaggcttgctgataacacgaagat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1263 aataagaccttacagtgtggtctggtctcgtattgcaaggcttgctgataacacgaagat 1204
Query: 528 atcctatgattgcttcttatggttcacaaccgtagattggatcccatgatataaggcgat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203 atcctatgattgcttcttatggttcacaaccgtagattggatcccatgatataaggcgat 1144
Query: 588 cagggccaccatcacaacaccaaacgacagtactaaagtattcaattgagcgtcagagat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1143 cagggccaccatcacaacaccaaacgacagtactaaagtattcaattgagcgtcagagat 1084
Query: 648 cattcttgaatcttcctatcgtaagcttctagaagggtttgttagttacagaaaccttcg 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 cattcttgaatcttcctatcgtaagcttctagaagggtttgttagttacagaaaccttcg 1024
Query: 708 acccatgtgttacattgcatatacttaatcgacttcaattttattttagtttttcaaaaa 767
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 1023 acccatgtgttacattgcatatacttaatcgacttcaattttatttaag-ttttcaaaat 965
Query: 768 tatcaaaatttactaatgctgtcaaagcgaagcgcattatcactacccttcttt-acatg 826
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 964 tatcaaaatttactaatgctgtcaaagcgaagcgcattatcactacccttctttaacatg 905
Query: 827 taatagtgacttctgacggctgtacttaaggggataggctaatgcggagcattcaa-gtc 885
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 904 taatagtgacttctgacggctgtacgtaaggggataggctaatgcggagcattcaaggtc 845
Query: 886 ttcctgcaaagtagaacggtacgaactttgatattgcgttcat 928
| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 tccctgcaaagtagaacggtacgaactttgatattgcgttcat 802
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6876
Number of Sequences: 1807
Number of extensions: 6876
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)