BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZG04FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1594 0.0
3x_Contig1408 107 4e-23
>3x_Contig1807
Length = 66587
Score = 1594 bits (804), Expect = 0.0
Identities = 849/860 (98%), Gaps = 4/860 (0%)
Strand = Plus / Plus
Query: 87 agtgttaccacttatctgcaatatcactaccttttagtaattagtatgacgatcaaacaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3715 agtgttaccacttatctgcaatatcactaccttttagtaattagtatgacgatcaaacaa 3774
Query: 147 tcggtgatggctaatcgtaccgaaagaggggaagatgtgaataaattagaaacaagttgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3775 tcggtgatggctaatcgtaccgaaagaggggaagatgtgaataaattagaaacaagttgt 3834
Query: 207 agtatggagtttgtcgaagatattttaaaatactcgagttagcgtatcttttctcatctt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3835 agtatggagtttgtcgaagatattttaaaatactcgagttagcgtatcttttctcatctt 3894
Query: 267 aatatggatgaggacaaatctttattgatcatttattatagactaatgaatgtataatcc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3895 aatatggatgaggacaaatctttattgatcatttattatagactaatgaatgtataatcc 3954
Query: 327 aaccactaatgattgaaatatgtgggtagccctgtaatactgtggccatctctcttcttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3955 aaccactaatgattgaaatatgtgggtagccctgtaatactgtggccatctctcttcttt 4014
Query: 387 acaatggcaaaatgttaggagaaggacccaatggcgtgattgccaacgggttgattcttg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4015 acaatggcaaaatgttaggagaaggacccaatggcgtgattgccaacgggttgattcttg 4074
Query: 447 gatgagatctggtatagtgccatttgatatggttgaagttagtaagttttaccgttccag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4075 gatgagatctggtatagtgccatttgatatggttgaagttagtaagttttaccgttccag 4134
Query: 507 tacaagtttctgagccacaaatggatgtaaggatacccgccacggacagtgttcaagttg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4135 tacaagtttctgagccacaaatggatgtaaggatacccgccacggacagtgttcaagttg 4194
Query: 567 gctttgaagtgctgagcgtatacaggatcgaatctgatcatggtagtgtataatctcaaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4195 gctttgaagtgctgagcgtatacaggatcgaatctgatcatggtagtgtataatctcaaa 4254
Query: 627 tcggcttcagtcaattgatctcccagtagatagaatttttttaagatttcttcttcagaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4255 tcggcttcagtcaattgatctcccagtagatagaatttttttaagatttcttcttcagaa 4314
Query: 687 gaactaccaggcctcaagattttatacctttcctttagaatgttctccaccttgtctaag 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4315 gaactaccaggcctcaagattttatacctttcctttagaatgttctccaccttgtctaag 4374
Query: 747 ttcttgaac-aagtcagcactggcatatggatggaaagagatggagatttttgccatatg 805
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4375 ttcttgaacaaagtcagcactggcatatggatggaaagagatggagatttttgccatatg 4434
Query: 806 acgagtcanacaaacccagcgaaaaggggtcattcacccctttcgcccggattaaagcnn 865
|||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 4435 acgagtcaaacaaacccagcgaaaaggggtcattcacccc-ttcggccggattaaagcct 4493
Query: 866 ctatgatgagctt-ctagtgcagnagttggaaacagatctgtcaggcaggtaccgatggt 924
||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 4494 -aatgatgagcttcctagtgcaggagttgaaaacagatctgtcaggcaggtaccgatggt 4552
Query: 925 accgttgatcacaattacca 944
||||||||||||||||||||
Sbjct: 4553 accgttgatcacaattacca 4572
>3x_Contig1408
Length = 6607
Score = 107 bits (54), Expect = 4e-23
Identities = 126/150 (84%)
Strand = Plus / Plus
Query: 500 gttccagtacaagtttctgagccacaaatggatgtaaggatacccgccacggacagtgtt 559
|||||| || ||||||||||||||||||||||||||||| ||||| || | ||||||
Sbjct: 2369 gttccaatataagtttctgagccacaaatggatgtaagggtaccccgagcgaatagtgtt 2428
Query: 560 caagttggctttgaagtgctgagcgtatacaggatcgaatctgatcatggtagtgtataa 619
||| |||| |||||| |||||| |||||||||| || ||||| | ||||||| |||||
Sbjct: 2429 caaattggttttgaaatgctgaacgtatacagggtcaaatcttacaatggtaggatataa 2488
Query: 620 tctcaaatcggcttcagtcaattgatctcc 649
|||||| || || ||||| |||||||||||
Sbjct: 2489 tctcaagtcagcctcagttaattgatctcc 2518
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6062
Number of Sequences: 1807
Number of extensions: 6062
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 2
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)