BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZG04RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 1235 0.0
>3x_Contig1781
Length = 20717
Score = 1235 bits (623), Expect = 0.0
Identities = 623/623 (100%)
Strand = Plus / Minus
Query: 71 agcgacggtgactgaaataccatcagtagcggacaaaacgtcgacaacaggttgagcaac 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11798 agcgacggtgactgaaataccatcagtagcggacaaaacgtcgacaacaggttgagcaac 11739
Query: 131 aaaaccagatccaagaagtaaaactttagacatcgttaatacgttggttgcgatcacaga 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11738 aaaaccagatccaagaagtaaaactttagacatcgttaatacgttggttgcgatcacaga 11679
Query: 191 aagagtattttcttgaagagatgatgatctgtctattatggcaggaaagatagcaggttg 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11678 aagagtattttcttgaagagatgatgatctgtctattatggcaggaaagatagcaggttg 11619
Query: 251 caattctgttacctcaacttatatagtcactatatatatatatatatatatattacaaaa 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11618 caattctgttacctcaacttatatagtcactatatatatatatatatatatattacaaaa 11559
Query: 311 gtcagtaaatcatcaaatcaacaagagtagtaccagtagtagcagctcatcaaaaactca 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11558 gtcagtaaatcatcaaatcaacaagagtagtaccagtagtagcagctcatcaaaaactca 11499
Query: 371 ctattcctgctctctgtcgttatccatctcgagcgatgtgccattgagatggaattttac 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11498 ctattcctgctctctgtcgttatccatctcgagcgatgtgccattgagatggaattttac 11439
Query: 431 aggttccggttcaccaatgtgttttgcgaaattccattggaatttcgacagccgaggtac 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11438 aggttccggttcaccaatgtgttttgcgaaattccattggaatttcgacagccgaggtac 11379
Query: 491 aatcgaaacggcaaagctagacagccagacagccagacggggggaccactggtctgggga 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11378 aatcgaaacggcaaagctagacagccagacagccagacggggggaccactggtctgggga 11319
Query: 551 caacccaccatctattagtcattctacaaactgaatgaagctcgatgaggagggaactga 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11318 caacccaccatctattagtcattctacaaactgaatgaagctcgatgaggagggaactga 11259
Query: 611 gttccgataaagacttgaagacatgtatgggatagtcagtgtacgttggtatgcacgtga 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11258 gttccgataaagacttgaagacatgtatgggatagtcagtgtacgttggtatgcacgtga 11199
Query: 671 tttacgttgaggtatggggaaat 693
|||||||||||||||||||||||
Sbjct: 11198 tttacgttgaggtatggggaaat 11176
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 33,306
Number of Sequences: 1807
Number of extensions: 33306
Number of successful extensions: 6107
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)