BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZG05RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig445 819 0.0
3x_Contig641 214 2e-55
3x_Contig1588 141 3e-33
>3x_Contig445
Length = 1719
Score = 819 bits (413), Expect = 0.0
Identities = 464/479 (96%), Gaps = 2/479 (0%)
Strand = Plus / Minus
Query: 440 ataaactattttcatctctttcttacttctatacaatgtttatgattgacaaaatcagca 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1708 ataaactattttcatctctttcttacttctatacaatgtttatgattgacaaaatcagca 1649
Query: 500 tctgaacctttaaattttgatctcaaaactggtttgaaataagtacacagatttccatat 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1648 tctgaacctttaaattttgatctcaaaactggtttgaaataagtacacagatttccatat 1589
Query: 560 taaaggcaaaagataaatgaaatagataaagaccaaaaaagtatattactttacctcttg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1588 taaaggcaaaagataaatgaaatagataaagaccaaaaaagtatattactttacctcttg 1529
Query: 620 agatgggtgttttttgttcccaccctgaaacccttcttaagtaacagccgattgtagaag 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1528 agatgggtgttttttgttcccaccctgaaacccttcttaagtaacagccgattgtagaag 1469
Query: 680 gaacaaaatgtagttagtacagcgggttcctagaaatagaaaggtctaatctggaaaaaa 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1468 gaacaaaatgtagttagtacagcgggttcctagaaatagaaaggtctaatctggaaaaaa 1409
Query: 740 gtaaataaataatgatacgaaatcttccccgccagaactcgaacctgnaatcttctggtt 799
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 1408 gtaaaaaaataatgatacgaaatcttccccgccaggactcgaacctggaatcttctggtt 1349
Query: 800 tcagaagtagctaacatcgtatccgtacgccgtgaccattgggccacgaggtataatatn 859
||||||||||||||||||||| || ||||||||||||||||||||||||| |||| |
Sbjct: 1348 tcagaagtagctaacatcgtagccagacgccgtgaccattgggccacgaggaataagaaa 1289
Query: 860 acgc-atgatttattcatgtaaattttggccctagtaataatgata-tcacatggactg 916
|||| |||||| ||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 1288 acgcaatgattaattcatgtaaattttggcctaagtaataatgatagtcacatggactg 1230
>3x_Contig641
Length = 2317
Score = 214 bits (108), Expect = 2e-55
Identities = 114/116 (98%)
Strand = Plus / Minus
Query: 40 atctttatacttgtcttttttctggaaagtattccataaagtcctcattaaccatggctt 99
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 116 atctttatacttgtcttcttgctggaaagtattccataaagtcctcattaaccatggctt 57
Query: 100 ggactcgtcattattcagattggccaaaaacttatcccttttttcctcaaacacga 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 ggactcgtcattattcagattggccaaaaacttatcccttttttcctcaaacacga 1
>3x_Contig1588
Length = 14692
Score = 141 bits (71), Expect = 3e-33
Identities = 88/94 (93%)
Strand = Plus / Plus
Query: 762 tcttccccgccagaactcgaacctgnaatcttctggtttcagaagtagctaacatcgtat 821
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 7250 tcttccccgccaggactcgaacctggaatcttctggtttcagaagtagctaacatcgtag 7309
Query: 822 ccgtacgccgtgaccattgggccacgaggtataa 855
|| ||||||||||||||||||||||||| ||||
Sbjct: 7310 ccagacgccgtgaccattgggccacgaggaataa 7343
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7920
Number of Sequences: 1807
Number of extensions: 7920
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 3
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)