BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZG06FM1.SCF screened BAC_end
(991 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1043 1582 0.0
>3x_Contig1043
Length = 5132
Score = 1582 bits (798), Expect = 0.0
Identities = 846/856 (98%), Gaps = 6/856 (0%)
Strand = Plus / Plus
Query: 88 acccccaattgttactccaaaacgaaagatccgccttcattaagtgctattcgttatggg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2509 acccccaattgttactccaaaacgaaagatccgccttcattaagtgctattcgttatggg 2568
Query: 148 gctccataaatgagtacatgatggacggtggtagagtaaaaaggtcggctgaggttccat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2569 gctccataaatgagtacatgatggacggtggtagagtaaaaaggtcggctgaggttccat 2628
Query: 208 gggatttagaaaactttactgttgggaaaataacaaaagaggtggatgatttctggaatg 267
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2629 gggatttagaaaactctactgttgggaaaataacaaaagaggtggatgatttctggaatg 2688
Query: 268 tgatacctgcggaatggaaatgggggaattttgattatgccagtcaacgcccatatcata 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2689 tgatacctgcggaatggaaatgggggaattttgattatgccagtcaacgcccatatcata 2748
Query: 328 tcaaaaagcttttcatgataacttcaatgaattgcttgcattttttgactataatatttt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2749 tcaaaaagcttttcatgataacttcaatgaattgcttgcattttttgactataatatttt 2808
Query: 388 gcattagggaatatcttccatttttaccttcaaaagaattaggtccctgcggaccaatcg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2809 gcattagggaatatcttccatttttaccttcaaaagaattaggtccctgcggaccaatcg 2868
Query: 448 aaccaccttttatgccacaaccaccatacacaacctattggtcagatatgtcgagaaagt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2869 aaccaccttttatgccacaaccaccatacacaacctattggtcagatatgtcgagaaagt 2928
Query: 508 gttttgcagcactacgacaactttgtgaaattttaaaggtagttttcgaaacggaatctg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2929 gttttgcagcactacgacaactttgtgaaattttaaaggtagttttcgaaacggaatctg 2988
Query: 568 aaaacactaaaggatctattaatctcatcgaatcatcacctttcttctcattttgcgctt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2989 aaaacactaaaggatctattaatctcatcgaatcatcacctttcttctcattttgcgctt 3048
Query: 628 ttgtttgtgctatccagtgcaattacggttcaaatttccctttcatggaccctgacgcag 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3049 ttgtttgtgctatccagtgcaattacggttcaaatttccctttcatggaccctgacgcag 3108
Query: 688 ctttatataagaagaataaagacaaaaatctatcatattgctataaaatggtattaaaga 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3109 ctttatataagaagaataaagacaaaaatctatcatattgctataaaatggtattaaaga 3168
Query: 748 ttctcaagtcaagggagagtttttgcccagtcactaagaactggttgcatatggttttca 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3169 ttctcaagtcaagggagagtttttgcccagtcactaagaactggttgcatatggttttca 3228
Query: 808 aagttcaggagatgtataaatctgttgctggtagcaggactagcagcaaggtagttcccg 867
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3229 aagttcaggagatgtataaatctgttgctggtagcaggactagcagcaaggtag-tcccg 3287
Query: 868 aacggttcanaaacaaacccagacttatgttccctatccagccggacaattttgaaattc 927
||||| ||| |||||||||||||||||||| ||||||||||| |||||||||||| ||
Sbjct: 3288 aacggctcag-aacaaacccagacttatgtt-cctatccagcc-gacaattttgaa--tc 3342
Query: 928 ttaattcatctcaaaa 943
|||||||||||||||
Sbjct: 3343 ctaattcatctcaaaa 3358
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6863
Number of Sequences: 1807
Number of extensions: 6863
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 991
length of database: 10,358,551
effective HSP length: 16
effective length of query: 975
effective length of database: 10,329,639
effective search space: 10071398025
effective search space used: 10071398025
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)