BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZG07FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1632 1582 0.0
>3x_Contig1632
Length = 13927
Score = 1582 bits (798), Expect = 0.0
Identities = 855/871 (98%), Gaps = 3/871 (0%)
Strand = Plus / Plus
Query: 85 ctttgttgaacttgttgaacatttctccattcacctacggtttgaccgtcgttcaagttt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1565 ctttgttgaacttgttgaacatttctccattcacctacggtttgaccgtcgttcaagttt 1624
Query: 145 acgacaacggtcaagtcttcccagcttccatcttggatatcactgacgatgaattgatct 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1625 acgacaacggtcaagtcttcccagcttccatcttggatatcactgacgatgaattgatct 1684
Query: 205 ctcacttcatctttgctgtcaacaccattgcttgtgtttccttggctgctggttacccaa 264
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1685 ctcacttcatctctgctgtcaacaccattgcttgtgtttccttggctgctggttacccaa 1744
Query: 265 ccttgccatctgtcggtcactctttgatcaacaactacaaggacttgttggctgtcgcta 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1745 ccttgccatctgtcggtcactctttgatcaacaactacaaggacttgttggctgtcgcta 1804
Query: 325 tcgctgctgactacatctacccagaaattgaagaattgaaggacagaattgagaacccag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1805 tcgctgctgactacatctacccagaaattgaagaattgaaggacagaattgagaacccag 1864
Query: 385 atgcttacgcttctgctgccccagttgctgctgcttccggctcttccgaagctgctgctg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1865 atgcttacgcttctgctgccccagttgctgctgcttccggctcttccgaagctgctgctg 1924
Query: 445 aagaagctccagctgaagaagaagaagaatctgatgacgacatgggtttcggtttgttcg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1925 aagaagctccagctgaagaagaagaagaatctgatgacgacatgggtttcggtttgttcg 1984
Query: 505 attaaacaccttataattatggaaacaataacaattaaattttaaattcacatatcggtt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1985 attaaacaccttataattatggaaacaataacaattaaattttaaattcacatatcggtt 2044
Query: 565 tcagatgatcaatctgtatctataagtttagttagtctttattaatttctatcttaagcg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2045 tcagatgatcaatctgtatctataagtttagttagtctttattaatttctatcttaagcg 2104
Query: 625 cacaaatcttatcgcatcanattatcgtgtcttcatggcgacaatttatttgttttttgc 684
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2105 cacaaatcttatcgcatcaaattatcgtgtcttcatggcgacaatttatttgttttttgc 2164
Query: 685 ctgtctaagcggtccgctccatagtagtgtaggtcagattattgctaatatttgaagaan 744
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2165 ctgtctaagcggtccgctccatagtagtgtaggtcagattattgctaatatttgaagaaa 2224
Query: 745 aactgacgtcggacacaaactagattaccgttcactaacagttttggtcaaagttgatgg 804
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2225 aactgacgtcggacacaaactagattaccgttcactaacag-tttggtcaaagttgatgg 2283
Query: 805 catagcttagcaactagcacacagngcggtctgatttagatgtctttatcggtgaggagt 864
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 2284 catagcttagcaactagcacacag-gcggtctgattaagatgtctttatcggtgaggagt 2342
Query: 865 tcaagtcaagaatataaagtcctctcagatctgtcttggaagaagtcatttttcaaa-ct 923
||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 2343 caaagtcaagataataaagtcctctcagatctgtctgagaagaagtcatttttcaaacct 2402
Query: 924 ttccagcagnatagggatcttgatgataatc 954
|||||||| ||| |||||||||||||||||
Sbjct: 2403 ttccagcaagataaggatcttgatgataatc 2433
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8330
Number of Sequences: 1807
Number of extensions: 8330
Number of successful extensions: 280
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)