BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZG07RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1354 1540 0.0
>3x_Contig1354
Length = 7778
Score = 1540 bits (777), Expect = 0.0
Identities = 842/857 (98%), Gaps = 5/857 (0%)
Strand = Plus / Plus
Query: 48 tttaccttcagggtctattttatcgacaatacttattaccaccgacagcatatgaaaaag 107
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 6056 tttaccttcagggtctagtgtatcgacaatacttattaccaccgacagcatatgaaaaag 6115
Query: 108 aataataatagaaataaacaatatatagcaactgtaacagagattgatgagtgggtgggt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6116 aataataatagaaataaacaatatatagcaactgtaacagagattgatgagtgggtgggt 6175
Query: 168 gggtcggaagggaaaaaggaagagacatcgggctgagaccagaagagccatattaggaaa 227
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 6176 gggtcggaagggaaaaaggaagagacatcgggctgagaccagaagagccagattaggaaa 6235
Query: 228 ataaaacgaaaggctagaatagaaaacacaatttacataccgaaaaactggcgcacggca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6236 ataaaacgaaaggctagaatagaaaacacaatttacataccgaaaaactggcgcacggca 6295
Query: 288 atacgcaatctctcgtaccacacctgagagtaaaacgcctttcgatcaccttaactcccg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6296 atacgcaatctctcgtaccacacctgagagtaaaacgcctttcgatcaccttaactcccg 6355
Query: 348 tgtcccttttcaacatcactcatgcatatattggatatttaaatctggtcttgcatctgc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6356 tgtcccttttcaacatcactcatgcatatattggatatttaaatctggtcttgcatctgc 6415
Query: 408 cactccaaactggaaacagagtgaaaccagccataattcacaatcggccgatccagcaag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6416 cactccaaactggaaacagagtgaaaccagccataattcacaatcggccgatccagcaag 6475
Query: 468 acatttcgtactcttgaggaactgttgatgatctaaggcaccaccgagatgaactcggtg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6476 acatttcgtactcttgaggaactgttgatgatctaaggcaccaccgagatgaactcggtg 6535
Query: 528 cccctcacttcaagcgctcttctttaatttctgtgctgcgttgaagagttggttcttttt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6536 cccctcacttcaagcgctcttctttaatttctgtgctgcgttgaagagttggttcttttt 6595
Query: 588 atctcagcaaaaatctgtgcttagaagttctgggcatggggagttcttctcaaagctttt 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6596 ttctcagcaaaaatctgtgcttagaagttctgggcatggggagttcttctcaaagctttt 6655
Query: 648 tgcgggtttttgccaccgttccatgcacagggtttttaagcttgcttgagtttttccgaa 707
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 6656 tgcgggtttttgccaccgttccatgcacaggg-ttttaagcttgcttgagtttttccgaa 6714
Query: 708 caaagggttgtaaaagcagagaagttggaaacacagtcgaagatgtagggaaacagcgta 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6715 caaagggttgtaaaagcagagaagttggaaacacagtcgaagatgtagggaaacagcgta 6774
Query: 768 acatcatttggtcgaagaccggtttctgtgggaacatggtgcggctgcgtgtttgccacc 827
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 6775 acatca-ttggtcgaagaccggttcctgtgggaacatggtgcggctgcgtgtttgccaca 6833
Query: 828 aaaacg-aaaaagaacc-aaaaaaaacgtttaacgcttatattgttcgtttggttaaaaa 885
|||||| |||||||||| |||||||||||| |||||| |||| ||||||||||| |||||
Sbjct: 6834 aaaacgaaaaaagaaccaaaaaaaaacgttaaacgctaatatcgttcgtttggtaaaaaa 6893
Query: 886 aa-gaatcgccgaatct 901
|| ||||||||||||||
Sbjct: 6894 aaggaatcgccgaatct 6910
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6484
Number of Sequences: 1807
Number of extensions: 6484
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)