BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZG08RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1586 0.0
>3x_Contig1774
Length = 27771
Score = 1586 bits (800), Expect = 0.0
Identities = 868/886 (97%), Gaps = 4/886 (0%)
Strand = Plus / Minus
Query: 56 aagggacagttttccnaagaggtccgagatctcgataacggccaacaaatttggaaatgc 115
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3728 aagggacagtggaccaaagaggtccgagatctcgataacggccaacaaatttggaaatgc 3669
Query: 116 ggaccgttagtggaaaacagtgaaaagaaatacggattcaccgtttttacctccaacttg 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3668 ggaccgttagtggaaaacagtgaaaagaaatacggattcaccgtttttacctccaacttg 3609
Query: 176 aacgagatcacagagacagaaaaggatcatttaccaccaactgattcccggttgagaccc 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3608 aacgagatcacagagacagaaaaggatcatttaccaccaactgattcccggttgagaccc 3549
Query: 236 gatattcgcctgtatgaaaacggtatcattacagaggctgaacaaatgaagctgtcactg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3548 gatattcgcctgtatgaaaacggtatcattacagaggctgaacaaatgaagctgtcactg 3489
Query: 296 gaacaaaagcaacgtgaaagaagagataagggcgaagacgcacaacctcaatacttcaaa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3488 gaacaaaagcaacgtgaaagaagagataagggcgaagacgcacaacctcaatacttcaaa 3429
Query: 356 cagattaaacccatgaaatggctccccgttactggtgaaaataactactgggaaagaaga 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3428 cagattaaacccatgaaatggctccccgttactggtgaaaataactactgggaaagaaga 3369
Query: 416 aaaaggcacgattggagcaacaccaaatctttatggtgaaagaaaaaggtaaaaaagcac 475
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3368 aaaaggcacgattggagcaacaccaaatctttatggtgaaag-aaaaggtaaaaaagcac 3310
Query: 476 gttgccattacattcggccgttactatctcggccactcatcactccgcatagtgtcaaaa 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3309 gttgccattacattcggccgttactatctcggccactcatcactccgcatagtgtcaaaa 3250
Query: 536 tatgtataataaagtgtcagatttaaataacccatagaaaagaaactaactcaagagatc 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3249 tatgtataataaagtgtcagatttaaataacccatagaaaagaaactaactcaagagatc 3190
Query: 596 aatacacaatccagcctaatgcatgccgaaccagaattttttattaattgcataaattct 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3189 aatacacaatccagcctaatgcatgccgaaccagaattttttattaattgcataaattct 3130
Query: 656 tcgaaagaaattcaagcgcgtgctatcagccgattcgaaatcccaagatctcgatctaat 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3129 tcgaaagaaattcaagcgcgtgctatcagccgattcgaaatcccaagatctcgatctaat 3070
Query: 716 tttcagcccgtgggtcggacgtaacaactcctctttttcaaccttattcagtggccttag 775
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3069 ttccagcccgtgggtcggacgtaacaactcctctttttcaaccttattcagtggcctagg 3010
Query: 776 gtagatacaaagacatattcactaaattacttcacatgccaaggcttctttgtgacagtt 835
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3009 gtagatacaaagacatattcactaaattacttcacatgccaaggcttctctgtgacagtt 2950
Query: 836 tccattgcttttttgcagtcctctctgtttcaataaatgtttatatgaacagnaaacacg 895
|||| |||||||||||||||||||||||||||||| |||| ||||||||||| |||||||
Sbjct: 2949 tcca-tgcttttttgcagtcctctctgtttcaatagatgtatatatgaacagaaaacacg 2891
Query: 896 tggtataacgtgatcacaaaactttgccccgttttttttccctttt 941
| |||| ||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 2890 t-gtatcacgtgatcacaaacctttg-cccgtttttttcccctttt 2847
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7172
Number of Sequences: 1807
Number of extensions: 7172
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)