BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZG09FM1.SCF screened BAC_end
(984 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1451 1614 0.0
>3x_Contig1451
Length = 8346
Score = 1614 bits (814), Expect = 0.0
Identities = 851/861 (98%), Gaps = 2/861 (0%)
Strand = Plus / Minus
Query: 87 tcaaaacagcaatacttggtttgttagcaagtctcttttgtctttctgatatattttgaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tcaaaacagcaatacttggtttgttagcaagtctcttttgtctttctgatatattttgaa 800
Query: 147 gtacttcatccgcttgatcctcaaaactgtcggaaccctcagcatcctcatcgtcaatat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gtacttcatccgcttgatcctcaaaactgtcggaaccctcagcatcctcatcgtcaatat 740
Query: 207 cagcccgttcttttcgtactatggcttgttcccgttttgaatcatcatcctcatcggccc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cagcccgttcttttcgtactatggcttgttcccgttttgaatcatcatcctcatcggccc 680
Query: 267 ctgtagccgaagctttaaatctttgtaacactttattgagactttcatccttgataacta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctgtagccgaagctttaaatctttgtaacactttattgagactttcatccttgataacta 620
Query: 327 aaggttcattaattacctgttgcgaggtgttgccattctctgatgacacttgttgtaaca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaggttcattaattacctgttgcgaggtgttgccattctctgatgacacttgttgtaaca 560
Query: 387 aactggaaagcctcttcttcctttcttctgcatcctctttcacagatccatttttattct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aactggaaagcctcttcttcctttcttctgcatcctctttcacagatccatttttattct 500
Query: 447 ttgaacggcgtttattagccttggctttctttaccatagtgcaatatctggtgggcagtt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttgaacggcgtttattagccttggctttctttaccatagtgcaatatctggtgggcagtt 440
Query: 507 gactgttgttatattaataagcagtcgagccagaatactattgtatgctcatctgtcaat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gactgttgttatattaataagcagtcgagccagaatactattgtatgctcatctgtcaat 380
Query: 567 ttgccttttttatgtcctttattaagaccacatatatttttcaattaaatgttgaaattt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttgccttttttatgtcctttattaagaccacatatatttttcaattaaatgttgaaattt 320
Query: 627 ataccattatattatacgtgaacagatatggcaacattcaacggtcttgtatacatgtga 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ataccattatattatacgtgaacagatatggcaacattcaacggtcttgtatacatgtga 260
Query: 687 tagatgctatatgactatggataataacgaatcactcttctaaattcttgagtctatcgt 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tagatgctatatgactatggataataacgaatcactcttctaaattcttgagtctatcgt 200
Query: 747 tgattgaatcggcgaatttgttaaattgtacatcatcgtcatttacttttcgcagtaagt 806
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 199 tgattgaatcggcgaatttgttaaattgtacatcatcgtcattcactttccgcagtaagt 140
Query: 807 cctgttacttttgctgaatatctngagctatctcaaacacgtggggaacatctttcgttg 866
||||| ||||||||||||||||| |||||||||||||||| ||||||||| |||||||
Sbjct: 139 cctgtaacttttgctgaatatctgaagctatctcaaacacggtgggaacatc-ttcgttg 81
Query: 867 gaattaccactatttttctgatccttttggttcaggggtaacatttggttgtgtcgaaat 926
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 80 gaattaccacta-ttttctgatccttttggttcaggggtaacaattggttgtgtcgaaat 22
Query: 927 catcttttgaagtgatgactg 947
|||||||||||||||||||||
Sbjct: 21 catcttttgaagtgatgactg 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7538
Number of Sequences: 1807
Number of extensions: 7538
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 984
length of database: 10,358,551
effective HSP length: 16
effective length of query: 968
effective length of database: 10,329,639
effective search space: 9999090552
effective search space used: 9999090552
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)