BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC17ZG09RM1.SCF screened BAC_end (945 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig111 624 e-179 >3x_Contig111 Length = 1001 Score = 624 bits (315), Expect = e-179 Identities = 349/358 (97%), Gaps = 2/358 (0%) Strand = Plus / Plus Query: 590 tttacagcagcagcatcatcatcagatggatatcattgacgattaacttgaaaaaattgt 649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4 tttacagcagcagcatcatcatcagatggatatcattgacgattaacttgaaaaaattgt 63 Query: 650 gctatacttgactcggattattgctttccacacatgagtactcttcttatccgttaaagc 709 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 64 gctatacttgactcggattattgctttccacacatgagtactcttcttatccgttaaagc 123 Query: 710 ctccaccttagtgtctttcagctcattctgggttgaagttttcacaaatgttaatagggt 769 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 124 ctccaccttagtgtctttcagctcattctgggttgaagttttcacaaatgttaatagggt 183 Query: 770 agacgctagttaatttcattttcttggagctgatacacgtgactttacagagttaattaa 829 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 184 agacgctagttaatttcattttcttggagctgatacacgtgactttacagagttaattaa 243 Query: 830 tttgaatagatactgcatacgtgggagaagcttgggtattaacccttctctt-attattt 888 |||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||| Sbjct: 244 tttgaatagatactgcatacgtggagtaagcttggttattaacccttctcttcattattt 303 Query: 889 ccataaga-tatactgctacttttgtcttaccgncaagcgcattctggctcattgaag 945 |||||| | ||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 304 ccataaaattatactgctacttctgtcttaccgtcaagcgcattctggctcattgaag 361 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,365 Number of Sequences: 1807 Number of extensions: 12365 Number of successful extensions: 81 Number of sequences better than 1.0e-20: 1 length of query: 945 length of database: 10,358,551 effective HSP length: 16 effective length of query: 929 effective length of database: 10,329,639 effective search space: 9596234631 effective search space used: 9596234631 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)