BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZG10RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1635 1641 0.0
>3x_Contig1635
Length = 12349
Score = 1641 bits (828), Expect = 0.0
Identities = 859/868 (98%), Gaps = 1/868 (0%)
Strand = Plus / Plus
Query: 48 taaatgacataatttacattttaaatatggatcatctcacctgtcatcatggtcttttag 107
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 7606 taaatgacataatttacaatataaatatggatcatctcacctgtcatcatggtcttttag 7665
Query: 108 gaattgtgaaggtatactaaccaattgttactctatgatctatccgaaaatccgcaaact 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7666 gaattgtgaaggtatactaaccaattgttactctatgatctatccgaaaatccgcaaact 7725
Query: 168 gcattagagaaaagtacaatcgaattgcaatgaccaaaacagatgaacctaaaaagccga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7726 gcattagagaaaagtacaatcgaattgcaatgaccaaaacagatgaacctaaaaagccga 7785
Query: 228 atttcttaattattgtcgccgatgatttagggtttacagatgtgtcgagttttggaggtg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7786 atttcttaattattgtcgccgatgatttagggtttacagatgtgtcgagttttggaggtg 7845
Query: 288 aaatacaaacgccaaaccttgataaattgtctaaaggtggtttcagattcactggttttc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7846 aaatacaaacgccaaaccttgataaattgtctaaaggtggtttcagattcactggttttc 7905
Query: 348 atactgcatcggcatgttcgccaactagatcgatgttgttgagcggtactgacaaccatt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7906 atactgcatcggcatgttcgccaactagatcgatgttgttgagcggtactgacaaccatt 7965
Query: 408 tggcaggtttgggccaaatggctgaatatgccaggcaatttccagaaaagttcaaggata 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7966 tggcaggtttgggccaaatggctgaatatgccaggcaatttccagaaaagttcaaggata 8025
Query: 468 aacctggttatgaaggttatttgaactataaggttgctgcattgcctgaaatattatccc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8026 aacctggttatgaaggttatttgaactataaggttgctgcattgcctgaaatattatccc 8085
Query: 528 cagaatattacacgctgatttcggggaaatggcaccttggattagaaaagccatattggc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8086 cagaatattacacgctgatttcggggaaatggcaccttggattagaaaagccatattggc 8145
Query: 588 caagtgaccgtggattccaaaaacgttttaccttgctgcctggtgcaggaaaccatttca 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8146 caagtgaccgtggattccaaaaacgttttaccttgctgcctggtgcaggaaaccatttca 8205
Query: 648 aatgcaatttggatagcaagtttcttctcccatggatttatcaggaaaatggcgaaaggg 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8206 aatgcaatttggatagcaagtttcttctcccatggatttatcaggaaaatggcgaaaggg 8265
Query: 708 tagaccataacaagttttcagaaaacttttatttcaccacttacttcacagataaatttt 767
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 8266 tagaccataacaagtttccagaaaacttttattccaccacttacttcacagataaatttt 8325
Query: 768 tggaatatttgaaggatgatgaagatagaataggtcgcccattctttggccagttgacct 827
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 8326 tggaatatttgaaggatgatgaagaaagaaaaggtcgcccattctttggccagttgacct 8385
Query: 828 acacagctccacattggccattacaggcttctgctgagactatcgcaaaatacaaaggta 887
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 8386 acacagctccacattggccattacaggctcctgctgagactatcgcaaaatacaaaggta 8445
Query: 888 agtattatggttggtccccaggcattga 915
||||| |||| |||||||||||||||||
Sbjct: 8446 agtataatgg-tggtccccaggcattga 8472
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6472
Number of Sequences: 1807
Number of extensions: 6472
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)