BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZG11RM1.SCF screened BAC_end
(991 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 1221 0.0
>3x_Contig1781
Length = 20717
Score = 1221 bits (616), Expect = 0.0
Identities = 623/624 (99%), Gaps = 1/624 (0%)
Strand = Plus / Minus
Query: 70 gcgacggtgactgaaatacc-tcagtagcggacaaaacgtcgacaacaggttgagcaaca 128
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 11797 gcgacggtgactgaaataccatcagtagcggacaaaacgtcgacaacaggttgagcaaca 11738
Query: 129 aaaccagatccaagaagtaaaactttagacatcgttaatacgttggttgcgatcacagaa 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11737 aaaccagatccaagaagtaaaactttagacatcgttaatacgttggttgcgatcacagaa 11678
Query: 189 agagtattttcttgaagagatgatgatctgtctattatggcaggaaagatagcaggttgc 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11677 agagtattttcttgaagagatgatgatctgtctattatggcaggaaagatagcaggttgc 11618
Query: 249 aattctgttacctcaacttatatagtcactatatatatatatatatatatattacaaaag 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11617 aattctgttacctcaacttatatagtcactatatatatatatatatatatattacaaaag 11558
Query: 309 tcagtaaatcatcaaatcaacaagagtagtaccagtagtagcagctcatcaaaaactcac 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11557 tcagtaaatcatcaaatcaacaagagtagtaccagtagtagcagctcatcaaaaactcac 11498
Query: 369 tattcctgctctctgtcgttatccatctcgagcgatgtgccattgagatggaattttaca 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11497 tattcctgctctctgtcgttatccatctcgagcgatgtgccattgagatggaattttaca 11438
Query: 429 ggttccggttcaccaatgtgttttgcgaaattccattggaatttcgacagccgaggtaca 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11437 ggttccggttcaccaatgtgttttgcgaaattccattggaatttcgacagccgaggtaca 11378
Query: 489 atcgaaacggcaaagctagacagccagacagccagacggggggaccactggtctggggac 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11377 atcgaaacggcaaagctagacagccagacagccagacggggggaccactggtctggggac 11318
Query: 549 aacccaccatctattagtcattctacaaactgaatgaagctcgatgaggagggaactgag 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11317 aacccaccatctattagtcattctacaaactgaatgaagctcgatgaggagggaactgag 11258
Query: 609 ttccgataaagacttgaagacatgtatgggatagtcagtgtacgttggtatgcacgtgat 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11257 ttccgataaagacttgaagacatgtatgggatagtcagtgtacgttggtatgcacgtgat 11198
Query: 669 ttacgttgaggtatggggaaatca 692
||||||||||||||||||||||||
Sbjct: 11197 ttacgttgaggtatggggaaatca 11174
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,863
Number of Sequences: 1807
Number of extensions: 22863
Number of successful extensions: 4017
Number of sequences better than 1.0e-20: 1
length of query: 991
length of database: 10,358,551
effective HSP length: 16
effective length of query: 975
effective length of database: 10,329,639
effective search space: 10071398025
effective search space used: 10071398025
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)