BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZG12FM1.SCF screened BAC_end
(976 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1726 1639 0.0
>3x_Contig1726
Length = 20144
Score = 1639 bits (827), Expect = 0.0
Identities = 872/883 (98%), Gaps = 3/883 (0%)
Strand = Plus / Plus
Query: 82 ttgcaatcgatattaccgaggataaactctcaactcgaaaaatctggtttacctgacatc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3532 ttgcaatcgatattaccgaggataaactctcaactcgaaaaatctggtttacctgacatc 3591
Query: 142 ttaggatccagcttccaatcaaatcgagttcccactctaacaaacgttatacgatccatt 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3592 ttaggatccagcttccaatcaaatcgagttcccactctaacaaacgttatacgatccatt 3651
Query: 202 ccaagggaatctatcacgacagaaaggcttaccggagagctagcacatattgaagaaaag 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3652 ccaagggaatctatcacgacagaaaggcttaccggagagctagcacatattgaagaaaag 3711
Query: 262 cagggaagttctatgagcaccaattccgacatgagtcgcatacaaggtgaaatctttgaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3712 cagggaagttctatgagcaccaattccgacatgagtcgcatacaaggtgaaatctttgaa 3771
Query: 322 gagttaggtgagaacttgcattcttattatatccctaacgacgttagattggtacaaatc 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3772 gagttaggtgagaacttgcattcttattatatccctaacgacgttagattggtacaaatc 3831
Query: 382 atgaaactttgggtttggtgtgaaaaccaattgcatagttcggatgttggtgttccgagg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3832 atgaaactttgggtttggtgtgaaaaccaattgcatagttcggatgttggtgttccgagg 3891
Query: 442 gttgaaggagtgatttagtgcaaaatctataatcttttatactatatatgcatgggttcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3892 gttgaaggagtgatttagtgcaaaatctataatcttttatactatatatgcatgggttcc 3951
Query: 502 ctatattcacattatgttttcaagcatttaacggcagcttgcaattttcacaccaaaaac 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3952 ctatattcacattatgttttcaagcatttaacggcagcttgcaattttcacaccaaaaac 4011
Query: 562 tcacagtctatagtgtcaccagtttccatctttaagaaacacaattgaatatcgtcgagg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4012 tcacagtctatagtgtcaccagtttccatctttaagaaacacaattgaatatcgtcgagg 4071
Query: 622 ttttttggaagttcctcgctcatggtgttgtagatttttacatttttggtaatggtgaag 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4072 ttttttggaagttcctcgctcatggtgttgtagatttttacatttttggtaatggtgaag 4131
Query: 682 gttttgcttggctgtttgaactgatcataaaagtgaccatctttaaagaagtgataaagt 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4132 gttttgcttggctgtttgaactgatcataaaagtgaccatctttaaagaagtgataaagt 4191
Query: 742 tttgattttaatagccttaatgtacaaccaaactctgttcttttttcattttcgaattct 801
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4192 tttgattttaatagccttaatgtacaaccaaactctggtcttttttcattttcgaattct 4251
Query: 802 tctggtgagaattc-atgtgggatgtgattggattat-caacagaagctttttggtatct 859
|||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 4252 tctggtgagaattcaatgtggaatgtgattggattatccaacagaagctttttggtatct 4311
Query: 860 tcgtcgataacttggcatctaacgtatatgtgagcgacatgcacaggtttgtggcaataa 919
||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct: 4312 tcgtcgataacttggcatctaacgtatatgtgagcgacatgcacaggtttg-gcaaagaa 4370
Query: 920 cttttcccttgatccgaactcctcgattattagaccggatttt 962
||||||||| ||| |||||||||||||||| ||||||||||||
Sbjct: 4371 cttttccctcgattcgaactcctcgattatgagaccggatttt 4413
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7221
Number of Sequences: 1807
Number of extensions: 7221
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)