BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZG12RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1748 1570 0.0
>3x_Contig1748
Length = 22566
Score = 1570 bits (792), Expect = 0.0
Identities = 852/864 (98%), Gaps = 6/864 (0%)
Strand = Plus / Minus
Query: 38 taagcttatattgaagct-tgtagaagttgtacgttgtactatcttgaagaacatttcaa 96
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 18380 taagcttatattgaagctatgtagaagacttacgttgtactatcttgaagaacatttcaa 18321
Query: 97 acaaaacttcttaccttaactagtctggtggtttggaataaccagagttttttttcccgg 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18320 acaaaacttcttaccttaactagtctggtggtttggaataaccagagttttttttcccgg 18261
Query: 157 tcaatgccgcctcataaacaaggtcagcacctgtccgtaatttcctgggtataccttgcc 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18260 tcaatgccgcctcataaacaaggtcagcacctgtccgtaatttcctgggtataccttgcc 18201
Query: 217 tgatcaaccgagtatccacagtatgcatgaattgaaaactcttgatcgtctgaacacaat 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18200 tgatcaaccgagtatccacagtatgcatgaattgaaaactcttgatcgtctgaacacaat 18141
Query: 277 aactaatagtattacttccgtgattgagttgaataagctcagaaatagccggcgaaatat 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18140 aactaatagtattacttccgtgattgagttgaataagctcagaaatagccggcgaaatat 18081
Query: 337 tgtagttcttaggggagttctgaatgaactaattaagttcaaaagatatgtcgaagtcag 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18080 tgtagttcttaggggagttctgaatgaactaattaagttcaaaagatatgtcgaagtcag 18021
Query: 397 ttcagttaatgaagagcatttatccaaaaccagacttcttcaacattgagagtttcgaag 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18020 ttcagttaatgaagagcatttatccaaaaccagacttcttcaacattgagagtttcgaag 17961
Query: 457 gaaattataatgagaaaaggtgctttacaaaatctacgtgtcttatgatatagcaaagaa 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17960 gaaattataatgagaaaaggtgctttacaaaatctacgtgtcttatgatatagcaaagaa 17901
Query: 517 aaaacatttccttgactatcgggtattaagtagaatatagtcagtaattgagatagatct 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17900 aaaacatttccttgactatcgggtattaagtagaatatagtcagtaattgagatagatct 17841
Query: 577 catgcatttgtaaattaatgattctgatttcttaaccggtctttggttgttcgtctcgag 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17840 catgcatttgtaaattaatgattctgatttcttaaccggtctttggttgttcgtctcgag 17781
Query: 637 gaccccgttaaacataagctgtaaatataacgtgggaaaaaagcacagttcgacggtcgc 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17780 gaccccgttaaacataagctgtaaatataacgtgggaaaaaagcacagttcgacggtcgc 17721
Query: 697 attgtcctggaagaataacaatcagtaggttgcattggcgctaaaattatgaatgtttag 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17720 attgtcctggaagaataacaatcagtaggttgcattggcgctaaaattatgaatgtttag 17661
Query: 757 attcagcttattgtaggtcgtaagcgtacttggatttttgccttagtcttctaccggact 816
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 17660 attcagcttattgtaggtcgtaagcgtacttggatttttgccttagtcttctaccgtact 17601
Query: 817 tgtagaattag-atgggacaggaatcaaac-agcggcgaacaaa-ccaac-acaaaccag 872
|||||||| || |||||||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct: 17600 tgtagaataagaatgggacaggaatcaaacaagcggcgaacaaacccaacaacaaaccag 17541
Query: 873 ccca-tttgtacccatgttttcga 895
|||| || ||||||||||||||||
Sbjct: 17540 cccagttggtacccatgttttcga 17517
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6800
Number of Sequences: 1807
Number of extensions: 6800
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)