BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC17ZH01RM1.SCF screened BAC_end (929 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1212 1509 0.0 >3x_Contig1212 Length = 5727 Score = 1509 bits (761), Expect = 0.0 Identities = 835/848 (98%), Gaps = 10/848 (1%) Strand = Plus / Minus Query: 45 agttctgggttttgtcgtgtacctttac-tgcaacctttaagcactcttcctcataacca 103 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct: 5171 agttctgggttttgtcgtg-acctttacatgcaacctttaagcactcttcctcataacca 5113 Query: 104 ggaatgagaatatagtcgattccatattgtgccaacttgtgatagctggtattattcttg 163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5112 ggaatgagaatatagtcgattccatattgtgccaacttgtgatagctggtattattcttg 5053 Query: 164 acaaaaatgtccggttccataacacccacgaagacagtctttatagcgccagttgtttgg 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5052 acaaaaatgtccggttccataacacccacgaagacagtctttatagcgccagttgtttgg 4993 Query: 224 attattcggtctacgcatggcaagttaccactgagccttagagaacaaggttccattgtt 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4992 attattcggtctacgcatggcaagttaccactgagccttagagaacaaggttccattgtt 4933 Query: 284 gtgtaaatgatggttccatctggaagtttcgcaccttctgattttgtgaagtatttatct 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4932 gtgtaaatgatggttccatctggaagtttcgcaccttctgattttgtgaagtatttatct 4873 Query: 344 aatgcacattgctcagcatgagtatttcctggtaattctctcgaataaccggtggaaagt 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4872 aatgcacattgctcagcatgagtatttcctggtaattctctcgaataaccggtggaaagt 4813 Query: 404 atatcagttccgttgacaaggagtgcgcctacattaaaggcagtttgagtttcaccacaa 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4812 atatcagttccgttgacaaggagtgcgcctacattaaaggcagtttgagtttcaccacaa 4753 Query: 464 tttcttgcctcatctatcgccaactccataaattttctgtgcggctcaatcgcccagtca 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4752 tttcttgcctcatctatcgccaactccataaattttctgtgcggctcaatcgcccagtca 4693 Query: 524 gggaagtccgttctgtaactccataatttttttccatcagaatcaagctcggtggattcg 583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4692 gggaagtccgttctgtaactccataatttttttccatcagaatcaagctcggtggattcg 4633 Query: 584 taccgataagcatgaagccacaaatcaagatcatttggaccaggatctgaatatagctct 643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4632 taccgataagcatgaagccacaaatcaagatcatttggaccaggatctgaatatagctct 4573 Query: 644 gtgtcacaaatttcacattgctgaccgagtaagacttcaccaaatgaatcaggatgcatc 703 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4572 gtgtcacaaatttcacattgctgaccgagtaagacttcaccaaatgaatcaggatgcatc 4513 Query: 704 caactctcggcggactcagtcttgccgacaagatctaagctccctataatatctgagaaa 763 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4512 caactctcggcggactcagtcttgccgacaagatctaagctccctataatatctgagaaa 4453 Query: 764 tctccttcgtaatctttgcccaaggattggtccccaaatgtgaggatttgagtatttagg 823 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| || | Sbjct: 4452 tctccttcgtaatctttgcccaagga-tggtccccaaatgtgaggatttgagtatata-g 4395 Query: 824 gatcgttagccatggggatgtccttagatgtttgtagatgaacttcttaatttgatgagg 883 |||||||||| || ||||||||| |||||| ||||||||||||| ||||||||||| | Sbjct: 4394 gatcgttagcaat-gggatgtcc-tagatg-ttgtagatgaact--ctaatttgatga-g 4341 Query: 884 ttctacca 891 |||||||| Sbjct: 4340 ttctacca 4333 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5359 Number of Sequences: 1807 Number of extensions: 5359 Number of successful extensions: 35 Number of sequences better than 1.0e-20: 1 length of query: 929 length of database: 10,358,551 effective HSP length: 16 effective length of query: 913 effective length of database: 10,329,639 effective search space: 9430960407 effective search space used: 9430960407 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)