BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC17ZH01RM1.SCF screened BAC_end
         (929 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1212                                                        1509   0.0  

>3x_Contig1212 
          Length = 5727

 Score = 1509 bits (761), Expect = 0.0
 Identities = 835/848 (98%), Gaps = 10/848 (1%)
 Strand = Plus / Minus

                                                                        
Query: 45   agttctgggttttgtcgtgtacctttac-tgcaacctttaagcactcttcctcataacca 103
            ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 5171 agttctgggttttgtcgtg-acctttacatgcaacctttaagcactcttcctcataacca 5113

                                                                        
Query: 104  ggaatgagaatatagtcgattccatattgtgccaacttgtgatagctggtattattcttg 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5112 ggaatgagaatatagtcgattccatattgtgccaacttgtgatagctggtattattcttg 5053

                                                                        
Query: 164  acaaaaatgtccggttccataacacccacgaagacagtctttatagcgccagttgtttgg 223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5052 acaaaaatgtccggttccataacacccacgaagacagtctttatagcgccagttgtttgg 4993

                                                                        
Query: 224  attattcggtctacgcatggcaagttaccactgagccttagagaacaaggttccattgtt 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4992 attattcggtctacgcatggcaagttaccactgagccttagagaacaaggttccattgtt 4933

                                                                        
Query: 284  gtgtaaatgatggttccatctggaagtttcgcaccttctgattttgtgaagtatttatct 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4932 gtgtaaatgatggttccatctggaagtttcgcaccttctgattttgtgaagtatttatct 4873

                                                                        
Query: 344  aatgcacattgctcagcatgagtatttcctggtaattctctcgaataaccggtggaaagt 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4872 aatgcacattgctcagcatgagtatttcctggtaattctctcgaataaccggtggaaagt 4813

                                                                        
Query: 404  atatcagttccgttgacaaggagtgcgcctacattaaaggcagtttgagtttcaccacaa 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4812 atatcagttccgttgacaaggagtgcgcctacattaaaggcagtttgagtttcaccacaa 4753

                                                                        
Query: 464  tttcttgcctcatctatcgccaactccataaattttctgtgcggctcaatcgcccagtca 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4752 tttcttgcctcatctatcgccaactccataaattttctgtgcggctcaatcgcccagtca 4693

                                                                        
Query: 524  gggaagtccgttctgtaactccataatttttttccatcagaatcaagctcggtggattcg 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4692 gggaagtccgttctgtaactccataatttttttccatcagaatcaagctcggtggattcg 4633

                                                                        
Query: 584  taccgataagcatgaagccacaaatcaagatcatttggaccaggatctgaatatagctct 643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4632 taccgataagcatgaagccacaaatcaagatcatttggaccaggatctgaatatagctct 4573

                                                                        
Query: 644  gtgtcacaaatttcacattgctgaccgagtaagacttcaccaaatgaatcaggatgcatc 703
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4572 gtgtcacaaatttcacattgctgaccgagtaagacttcaccaaatgaatcaggatgcatc 4513

                                                                        
Query: 704  caactctcggcggactcagtcttgccgacaagatctaagctccctataatatctgagaaa 763
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4512 caactctcggcggactcagtcttgccgacaagatctaagctccctataatatctgagaaa 4453

                                                                        
Query: 764  tctccttcgtaatctttgcccaaggattggtccccaaatgtgaggatttgagtatttagg 823
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
Sbjct: 4452 tctccttcgtaatctttgcccaagga-tggtccccaaatgtgaggatttgagtatata-g 4395

                                                                        
Query: 824  gatcgttagccatggggatgtccttagatgtttgtagatgaacttcttaatttgatgagg 883
            |||||||||| || ||||||||| |||||| |||||||||||||   ||||||||||| |
Sbjct: 4394 gatcgttagcaat-gggatgtcc-tagatg-ttgtagatgaact--ctaatttgatga-g 4341

                    
Query: 884  ttctacca 891
            ||||||||
Sbjct: 4340 ttctacca 4333


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5359
Number of Sequences: 1807
Number of extensions: 5359
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)