BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZH02FM1.SCF screened BAC_end
(989 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1340 1681 0.0
>3x_Contig1340
Length = 7156
Score = 1681 bits (848), Expect = 0.0
Identities = 896/906 (98%), Gaps = 5/906 (0%)
Strand = Plus / Plus
Query: 88 atttagcctccgatagtgaagaatctgaagttgagcatgatgatcaagttaaaaataaac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 atttagcctccgatagtgaagaatctgaagttgagcatgatgatcaagttaaaaataaac 734
Query: 148 tcaaggctttagtaatggattccgtaaaagtggggcaaaagtcactatttgatcaaaagg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tcaaggctttagtaatggattccgtaaaagtggggcaaaagtcactatttgatcaaaagg 794
Query: 208 aagatgaagacgataatgaggctgatatggaaataactttcactccaggcctggatgagt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aagatgaagacgataatgaggctgatatggaaataactttcactccaggcctggatgagt 854
Query: 268 ctggccaacaagataccaatgataacgaagaggaaagcaccattgataagattagacgta 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ctggccaacaagataccaatgataacgaagaggaaagcaccattgataagattagacgta 914
Query: 328 aagaaaaagaaagacgtaagaagagaaaggacagagtcaaggagcttaagaaggaatcag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 aagaaaaagaaagacgtaagaagagaaaggacagagtcaaggagcttaagaaggaatcag 974
Query: 388 aagccaaattaaaggagaaccttaagaagaagaaagatacttctcacagcatcgatgacg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 aagccaaattaaaggagaaccttaagaagaagaaagatacttctcacagcatcgatgacg 1034
Query: 448 ataagaaaaagggagagttagagctcttaatgctagatgaaaatgagggtgaatcaacaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 ataagaaaaagggagagttagagctcttaatgctagatgaaaatgagggtgaatcaacaa 1094
Query: 508 ttaacaacaaggcacacttcaacatgaatgagattctcaaatctgagaaggaaaaatcca 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1095 ttaacaacaaggcacacttcaacatgaatgagattctcaaatctgagaaggaaaaatcca 1154
Query: 568 aaaaggccaagtatcaaaacaaggagaagattgtggatgatgaattcactccagacgtta 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1155 aaaaggccaagtatcaaaacaaggagaagattgtggatgatgaattcactccagacgtta 1214
Query: 628 atgatccaagatttaaagaggtctttgaagatcacgatttcgcgattgatcctactcaac 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1215 atgatccaagatttaaagaggtctttgaagatcacgatttcgcgattgatcctactcaac 1274
Query: 688 cagagttcaagaagacaccagctatggagaagattttaaaggaacgtacagtacgttcaa 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1275 cagagttcaagaagacaccagctatggagaagattttaaaggaacgtacagtacgttcaa 1334
Query: 748 gcaaaaaatctaggggcaaaaagcgtaaccacgaaattgcaaatactgaacatagtaaag 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1335 gcaaaaaatctaggggcaaaaagcgtaaccacgaaattgcaaatactgaacatagtaaag 1394
Query: 808 acatanaatagatcggcggtttagttgaaaaacttaa-gccaagaac-aaagaac-aaac 864
||||| | |||||||||||||||||||||||||||| ||||||||| ||||||| ||||
Sbjct: 1395 acataaataagatcggcggtttagttgaaaaacttaaggccaagaacaaaagaacaaaac 1454
Query: 865 actaatttgcaaacttgtggacactttatatcaacccaaagacgtncacatcttatatgt 924
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1455 actaatttgcaaacttgtggacactttatatcaacccaaagacgtccacatcttatatgt 1514
Query: 925 atatattcagcatttgattaaagcat-aattcatcatttcactt-atcatgcgactgtat 982
|||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||
Sbjct: 1515 atatattcagcatttgattaaagcataaatacatcatttcacttaatcatgcgactgtat 1574
Query: 983 catggc 988
||||||
Sbjct: 1575 catggc 1580
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9185
Number of Sequences: 1807
Number of extensions: 9185
Number of successful extensions: 82
Number of sequences better than 1.0e-20: 1
length of query: 989
length of database: 10,358,551
effective HSP length: 16
effective length of query: 973
effective length of database: 10,329,639
effective search space: 10050738747
effective search space used: 10050738747
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)