BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZH02RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1295 1641 0.0
>3x_Contig1295
Length = 7117
Score = 1641 bits (828), Expect = 0.0
Identities = 870/883 (98%), Gaps = 1/883 (0%)
Strand = Plus / Plus
Query: 44 gcttatcagctgtcattacttttttttcggtcagcattgatgaaaacccggctcatatct 103
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 882 gcttatcagctgtcattactttctgctcggtcagcattgatgaaaacccggctcatatct 941
Query: 104 cattaacttcgcctcgctcctaatgtaaagatatatacctaagaaataataaggaatgat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 cattaacttcgcctcgctcctaatgtaaagatatatacctaagaaataataaggaatgat 1001
Query: 164 aagtgaatctatccaaaaacctggtccaactattcttcaacctagttttcttttattgtg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 1002 aagtgaatctatccaaaaacctggtccaactattcttcaacctagttttctttcactgtg 1061
Query: 224 tgagtcacactattataccaaatacccatatgtaagttacatcttttttcagtgtcacta 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 tgagtcacactattataccaaatacccatatgtaagttacatcttttttcagtgtcacta 1121
Query: 284 tcaaaactcctgtattgttatccataaactttagaaatacagtacagtgcgtatcccgat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1122 tcaaaactcctgtattgttatccataaactttagaaatacagtacagtgcgtatcccgat 1181
Query: 344 gtagacagaatttccggtactctacctccaacttaatgccatatgcctgcgtatcgtgac 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1182 gtagacagaatttccggtactctacctccaacttaatgccatatgcctgcgtatcgtgac 1241
Query: 404 gctttcgaccgaaatgaatttcgggataatagctacatacatatatacatctcatatctt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1242 gctttcgaccgaaatgaatttcgggataatagctacatacatatatacatctcatatctt 1301
Query: 464 ccaccgaacaaggttggagattgttaactcccagttcgtcactcggacttttttatgcat 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1302 ccaccgaacaaggttggagattgttaactcccagttcgtcactcggacttttttatgcat 1361
Query: 524 gttcgggattagacaggaggctttcactatgtgttatatcaaatgttctggtttctcttt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1362 gttcgggattagacaggaggctttcactatgtgttatatcaaatgttctggtttctcttt 1421
Query: 584 gtcgctatataaagcaataaattggtttgaaatcaaaaattccatcataagaaaaacgtc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1422 gtcgctatataaagcaataaattggtttgaaatcaaaaattccatcataagaaaaacgtc 1481
Query: 644 cctttatttctataggagacaaaactccattatatagggagaacacaggaacggtttttt 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1482 cctttatttctataggagacaaaactccattatatagggagaacacaggaacggtttttt 1541
Query: 704 tctaacttcacagatacaatagattaactgagtcatataacaaggtgtgttagttatatt 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1542 tctaacttcacagatacaatagattaactgagtcatataacaaggtgtgttagttatatt 1601
Query: 764 gcgtatacattgtttcagaagttacagtatccggttagcgttgtgtgggaagntagatat 823
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 1602 gcgtatacattgtttcagaagttacagtatccggttagcgttgtgtggaaagttagatat 1661
Query: 824 tattttaccgcttataagtgaagaacctcagattttaataggatcagaaacagagggata 883
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1662 tattttaccgcttataagtgaagaacctcagaatttaataggatcagaaacagagggata 1721
Query: 884 tatacactaatattttaacccgccatggggaaatgtttcaggt 926
||||||||||||| | |||| ||||| |||||||||| |||||
Sbjct: 1722 tatacactaatatctaaaccagccat-gggaaatgttccaggt 1763
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6649
Number of Sequences: 1807
Number of extensions: 6649
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)