BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZH03FM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1321 1483 0.0
>3x_Contig1321
Length = 8217
Score = 1483 bits (748), Expect = 0.0
Identities = 848/876 (96%), Gaps = 6/876 (0%)
Strand = Plus / Minus
Query: 88 attaaatgacaataacttaacaagtttacctgcggaaatcaagtactcaaaaaaactaat 147
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 7660 attaaatgacaataacttaacaagttgtactgcggaaatcaagtactcaaaaaaactaat 7601
Query: 148 tcatttttctgccgccaacaacaagttggatagtattccggaagaaataggagaactctc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7600 tcatttttctgccgccaacaacaagttggatagtattccggaagaaataggagaactctc 7541
Query: 208 caatcttaaatcacttgatttacattgtaataatattagagaattacccatttcaattgt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7540 caatcttaaatcacttgatttacattgtaataatattagagaattacccatttcaattgt 7481
Query: 268 aaatttagagctaacaacattaaatttctcctctaatttacttggctacaaccccggatt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7480 aaatttagagctaacaacattaaatttctcctctaatttacttggctacaaccccggatt 7421
Query: 328 agaggactatgaaaatacccctttatcaaaatcattactatttctcaatactgctgacaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7420 agaggactatgaaaatacccctttatcaaaatcattactatttctcaatactgctgacaa 7361
Query: 388 caatctcaataatgagatgcttcctttattcaacttcaacactagcttgaagataatcaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7360 caatctcaataatgagatgcttcctttattcaacttcaacactagcttgaagataatcaa 7301
Query: 448 tctttcttataatgatatttctgatatttctgcattaaacctaccatcgttgacagagtt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7300 tctttcttataatgatatttctgatatttctgcattaaacctaccatcgttgacagagtt 7241
Query: 508 gtatctatccggcaatgctatcaccagcttgcccggtgaagtgttccaaagaatgaagaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7240 gtatctatccggcaatgctatcaccagcttgcccggtgaagtgttccaaagaatgaagaa 7181
Query: 568 tttgaaggtgataatgttaaatggtaataagctgatgtcactaccatcggagctctctca 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7180 tttgaaggtgataatgttaaatggtaataagctgatgtcactaccatcggagctctctca 7121
Query: 628 actttcgaatttgacagttctagatgttggttcaaatcaattaaaatacaatatctcaaa 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7120 actttcgaatttgacagttctagatgttggttcaaatcaattaaaatacaatatctcaaa 7061
Query: 688 ctaccattatgattggaactggatgaataatttgaacctaaaatatttgaacttttcttg 747
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 7060 ctaccattatgattggaactggatgaataatttgaacctaaaatatttgaacttttctgg 7001
Query: 748 gaataaaaggttcgaaatanagtcaatgattggccctgatactaaaacagatttgtccga 807
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7000 gaataaaaggttcgaaataaagtcaatgattggccctgatactaaaacagatttgtccga 6941
Query: 808 cttgacaat-tttaaacagttaanaa-tttggggttgatggatgttacaatgaaaacttc 865
||||||||| || |||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct: 6940 cttgacaatcttaaaacagttaaaaattttggggttgatggatgttacaatgaaaaactc 6881
Query: 866 --aggtttctgacgatggtgtcaac-ttcgtctta-gactaccggatccatgattaatgt 921
||||| ||||||||||||||||| ||||||| | |||||| |||||| |||||||
Sbjct: 6880 caaggttcctgacgatggtgtcaactttcgtctaataactaccttatccattattaatgg 6821
Query: 922 tatgaanattggtggtgctgatactttgggtaaaaa 957
|||||| ||||| | || ||||||||||||||||
Sbjct: 6820 tatgaagtatggtgtttcttatactttgggtaaaaa 6785
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8014
Number of Sequences: 1807
Number of extensions: 8014
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)