BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZH03RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1709 1394 0.0
>3x_Contig1709
Length = 16948
Score = 1394 bits (703), Expect = 0.0
Identities = 826/851 (97%), Gaps = 12/851 (1%)
Strand = Plus / Plus
Query: 40 cttccatgtc-gagttcattttttttatcttagtttccaattgtttgattgacctttcca 98
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2469 cttccatgtcagagttcatttttgctatcttagtttccaattgtttgattgacctttcca 2528
Query: 99 -tttttcccttttcaaatcatacaatacttttgatgattctaaagagttgattgtggatt 157
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2529 atttttcccttttcaaatcatacaatacttttgatgattctaaagagttgattgtggatt 2588
Query: 158 tcatagatttcttcaattcgatttcatgattccattgaactttaaagttatcaagttcca 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2589 tcatagatttcttcaattcgatttcatgattccattgaactttaaagttatcaagttcca 2648
Query: 218 tttgtaactgcagcttcgtgtcattgaaatcttgtaaagtcatcgaaaattgctgcaaga 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2649 tttgtaactgcagcttcgtgtcattgaaatcttgtaaagtcatcgaaaattgctgcaaga 2708
Query: 278 catcatgcaaatcctcttgggaacaaactaaaatattcttcaagtcttggattgaaaacc 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2709 catcatgcaaatcctcttgggaacaaactaaaatattcttcaagtcttggattgaaaacc 2768
Query: 338 cgtctagatcgttaagagtagttaaagaagaataagaaggggtgatagtttttgaggatt 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2769 cgtctagatcgttaagagtagttaaagaagaataagaaggggtgatagtttttgaggatt 2828
Query: 398 gcgtaatcatcagaggctttctccatttcacttctgcaggtatcagatgagttatatctt 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2829 gcgtaatcatcagaggctttctccatttcacttctgcaggtatcagatgagttatatctt 2888
Query: 458 ctatcacttgagcttcttctgggaagtctggcgacatagaagcatctgtggtaagtttag 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2889 ctatcacttgagcttcttctgggaagtctggcgacatagaagcatctgtggtaagtttag 2948
Query: 518 tattaacaggcaacgtcatgacaaacacattaggtagcttattagtgaaacccaattggt 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2949 tattaacaggcaacgtcatgacaaacacattaggtagcttattagtgaaacccaattggt 3008
Query: 578 taacggtgaccagatctatttggtactgctgccctggcttcaaaccctgtaacgaaacac 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3009 taacggtgaccagatctatttggtactgctgccctggcttcaaaccctgtaacgaaacac 3068
Query: 638 atgttgtaagtttctcttcgtattttggaaaattaccaacttagcttcccgttcaagtaa 697
||| |||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 3069 atg-tgtaag-ttctcttcgta-tttggaaaattaccaac-tagcttcccgttcaagtaa 3124
Query: 698 agtttatacgatagtacttttgaatctgtgatgcgattcgtctagccctgttgatgaata 757
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3125 agtttatacgatagtac-tttgaatctgtgatgcgattcgtctagccctgttgatgaata 3183
Query: 758 tgat-caatcaagctcattcttcccatgttgagttatagtttcctgaagtaactttatcc 816
||| |||||| ||||||||| || |||| ||||||||||||| || ||||| ||||||
Sbjct: 3184 -gatacaatcaggctcattctcccaatgtagagttatagtttcttg-agtaatcttatcc 3241
Query: 817 acagatactttggttcgattgtggtaattcgatattctacaggccaacattctttgaact 876
||||||||||||| ||||||||||||||||||||||| ||| ||||||| || ||||||
Sbjct: 3242 acagatactttgg-tcgattgtggtaattcgatattcaacaagccaacaatc-ttgaaca 3299
Query: 877 ccggaatatgt 887
|||||||||||
Sbjct: 3300 ccggaatatgt 3310
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8817
Number of Sequences: 1807
Number of extensions: 8817
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)