BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZH05FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1788 1548 0.0
>3x_Contig1788
Length = 28493
Score = 1548 bits (781), Expect = 0.0
Identities = 858/873 (98%), Gaps = 8/873 (0%)
Strand = Plus / Minus
Query: 88 ccaagaataattaatgatattatatagactgtaccttattagacaccttagcctttaata 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15677 ccaagaataattaatgatattatatagactgtaccttattagacaccttagcctttaata 15618
Query: 148 ttatagtaaagatgtcgttgatctattttgtattcaggtatgtaactatagtatctttag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15617 ttatagtaaagatgtcgttgatctattttgtattcaggtatgtaactatagtatctttag 15558
Query: 208 aacttccgtacttaagtgttaaaattcctgccgttcttaagtgaaatcctttaaataata 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15557 aacttccgtacttaagtgttaaaattcctgccgttcttaagtgaaatcctttaaataata 15498
Query: 268 tcacatttcgttacgtgaaaagttggtgaaatttgttatatgcgcacaatattatgtgaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15497 tcacatttcgttacgtgaaaagttggtgaaatttgttatatgcgcacaatattatgtgaa 15438
Query: 328 atgataaataaaagaaatttgttcaaataacatgtaggtttctaagctacaaagatagaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15437 atgataaataaaagaaatttgttcaaataacatgtaggtttctaagctacaaagatagaa 15378
Query: 388 cggtcaatcaacagactagagaacgaactttataaggctgctggctgagctgggattggc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15377 cggtcaatcaacagactagagaacgaactttataaggctgctggctgagctgggattggc 15318
Query: 448 taaccgtgtactgtctattgggactaggtgttacaagtccgttgtttcatattattttcc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15317 taaccgtgtactgtctattgggactaggtgttacaagtccgttgtttcatattattttcc 15258
Query: 508 gagactatcctttttatctattctatatctgccagtttggaataaaaaaggcatcgctca 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15257 gagactatcctttttatctattctatatctgccagtttggaataaaaaaggcatcgctca 15198
Query: 568 tactggacttatttgtgctaattagaataccccgagaacaccgatctttcgttagtgcca 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15197 tactggacttatttgtgctaattagaataccccgagaacaccgatctttcgttagtgcca 15138
Query: 628 tttcaaggagatctaaccaagtgtaatattactataccgtagaatttttttttttttgcc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15137 tttcaaggagatctaaccaagtgtaatattactataccgtagaatttttttttttttgcc 15078
Query: 688 agcctttcctactatcagctcattaatcagatacattgtcaatatgatgggaataaaatc 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15077 agcctttcctactatcagctcattaatcagatacattgtcaatatgatgggaataaaatc 15018
Query: 748 cagacatctatacgaccgtttgactaaaatagttatcgataaagatctaagcgcgtttaa 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15017 cagacatctatacgaccgtttgactaaaatagttatcgataaagatctaagcgcgtttaa 14958
Query: 808 cgaaatatcgccttcgcaattgat-ccacagctatcttgacattt-agcataacgatacc 865
|||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||
Sbjct: 14957 cgaaatatcgccttcgcaattgatcccacagctatctgaacatttcagcataacgatacc 14898
Query: 866 gaaggagat-ttttatttttacgaggacccagaggaaga-cttttac-cagattgaaaga 922
||| ||||| || ||| | ||||||||| ||||||||| ||||||| ||||||||||||
Sbjct: 14897 gaa-gagatcttcaattataacgaggaccaagaggaagaccttttacacagattgaaaga 14839
Query: 923 -ctatcga-gtaccttgttgtgaaatttgcaaa 953
||||||| ||||||||||||||||||||||||
Sbjct: 14838 gctatcgaggtaccttgttgtgaaatttgcaaa 14806
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,096
Number of Sequences: 1807
Number of extensions: 14096
Number of successful extensions: 155
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)