BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZH07FM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig975 1594 0.0
>3x_Contig975
Length = 5628
Score = 1594 bits (804), Expect = 0.0
Identities = 865/881 (98%), Gaps = 4/881 (0%)
Strand = Plus / Minus
Query: 86 aagataatcaatagaaagtggagaacgagaaagatagttaaagttaaatatgctccgtgg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2687 aagataatcaatagaaagtggagaacgagaaagatagttaaagttaaatatgctccgtgg 2628
Query: 146 tgatgctaacttgcctgttgccttagtgaagacgtactatacaagatagattattctttt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2627 tgatgctaacttgcctgttgccttagtgaagacgtactatacaagatagattattctttt 2568
Query: 206 gaggttctgctgctactcagtttgtcaagtgaacgctcttcttccaaggtaccaccgcct 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2567 gaggttctgctgctactcagtttgtcaagtgaacgctcttcttccaaggtaccaccgcct 2508
Query: 266 attccatgattaatgacatcgcataggtgcaaagtagggaaaacggcagaagaaacatgc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2507 attccatgattaatgacatcgcataggtgcaaagtagggaaaacggcagaagaaacatgc 2448
Query: 326 tttacgtgattaaaggatagaagatatggcgaatgagcacaaaagagccggaattaatat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2447 tttacgtgattaaaggatagaagatatggcgaatgagcacaaaagagccggaattaatat 2388
Query: 386 tttccatctcgtctaactacagaaataatgagaaatatgttttgattataggtaccatgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2387 tttccatctcgtctaactacagaaataatgagaaatatgttttgattataggtaccatgt 2328
Query: 446 taactaatggaagttcctcgtacatttattgaagttttactcccgcattgtaaaggaaag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2327 taactaatggaagttcctcgtacatttattgaagttttactcccgcattgtaaaggaaag 2268
Query: 506 tagcttagcattttctttctgctcataagccagattttagtgatgacttttcgagttcat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2267 tagcttagcattttctttctgctcataagccagattttagtgatgacttttcgagttcat 2208
Query: 566 attcaatctttaacttctttcctatagttggtatctttagactatgtagtctatgtgtct 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2207 attcaatctttaacttctttcctatagttggtatctttagactatgtagtctatgtgtct 2148
Query: 626 gaaaaatcagagggctattgtagtttcatagtattattacccacggtctaagttttgaga 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2147 gaaaaatcagagggctattgtagtttcatagtattattacccacggtctaagttttgaga 2088
Query: 686 atcatttggtgcccttgttcgtttctttatttggtatttgctctactacatcataccatt 745
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 2087 atcatttggtgcccttgttcgtttc-ttatttgttatttgctctactacatcataccatt 2029
Query: 746 ctgcaagaataaaatgttcgatttgacatttttcacaccaatctcgcgttacttagcttt 805
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2028 ctgcaagaataaaatgttcgatttgacatttttcacaccaatctcgcgttacttagcttc 1969
Query: 806 cacattaaacaaaaacagggatcaatgccaactgggcatttagtgatttcaaagtaatcc 865
||||| ||||||||||| ||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 1968 cacataaaacaaaaacaaggatcaatgccaact-ggcatttagtgattcaaaagtaatcc 1910
Query: 866 ttcatagtaccaaaaaagac-aactagttattcagttgcacgttttggggctcattcata 924
| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1909 tccatagtacc-aaaaagacaaactagttattcagttgcacgttttggggctcattcata 1851
Query: 925 aagcccttcatatgtcctctactctttgntcgnatttncgg 965
|||||||||||||| |||||||||||| ||| |||| |||
Sbjct: 1850 gagcccttcatatgttctctactctttgttcgtattttcgg 1810
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6633
Number of Sequences: 1807
Number of extensions: 6633
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)