BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZH07RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig214 819 0.0
3x_Contig1485 551 e-157
>3x_Contig214
Length = 1381
Score = 819 bits (413), Expect = 0.0
Identities = 439/445 (98%), Gaps = 2/445 (0%)
Strand = Plus / Plus
Query: 430 tatattcgaagaaggtttatgagtcgatggctgagttacctgtgcctgaaatcaaaaggg 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26 tatattcgaagaaggtttatgagtcgatggctgagttacctgtgcctgaaatcaaaaggg 85
Query: 490 tgactttagaatctttgtatttatcagtaagatccatgggcataaaaaacgttactaagt 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 tgactttagaatctttgtatttatcagtaagatccatgggcataaaaaacgttactaagt 145
Query: 550 ttttacagcaaggcctagacccgccgcctttatcctcgttggaaaaagcagagcaaatat 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ttttacagcaaggcctagacccgccgcctttatcctcgttggaaaaagcagagcaaatat 205
Query: 610 taactacgacaggactaattgatgaaacagacaacacgttaacacagctaggtaagtttg 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 taactacgacaggactaattgatgaaacagacaacacgttaacacagctaggtaagtttg 265
Query: 670 tgagcttgctacctgtcatggatagcaaacatggtaaactattgattttttctatcctgt 729
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgagcttgctacctggcatggatagcaaacatggtaaactattgattttttctatcctgt 325
Query: 730 ttggttgcaccgacataggtgtgttaattgcctcactataaagcgttggaacctctatat 789
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 326 ttggttgcaccgacataggtgtgttaattgcctcactattaagcgttggaacctctatat 385
Query: 790 ttatcaatgagtatgaaaatagagtcgcaatcaaggaaatacttgttgagaatgaaaatc 849
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 386 ttatcaatgagtatgaaaatagagtcgcaatcagggaaatacttgttgagaatgaaaatc 445
Query: 850 ttagttgatgtttttagcagtcgtt 874
||| ||||| ||||||||||||||
Sbjct: 446 -taggtgatg-ttttagcagtcgtt 468
>3x_Contig1485
Length = 9830
Score = 551 bits (278), Expect = e-157
Identities = 284/286 (99%)
Strand = Plus / Plus
Query: 45 ttacgcgaaagtaacgatgtatctttgattgtttttcttcctggcgttggagaagtgaac 104
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 9529 ttacgcgaaagtaacgatggatctttgattgtttttcttcctggtgttggagaagtgaac 9588
Query: 105 cgctgctgcaaaactttgagcaaagctgattctgactccttgttcgagattttaccattg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9589 cgctgctgcaaaactttgagcaaagctgattctgactccttgttcgagattttaccattg 9648
Query: 165 cattccgctttaactcctgatgatcaaaagagagtcttcaaaaaattcaaatccagaaga 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9649 cattccgctttaactcctgatgatcaaaagagagtcttcaaaaaattcaaatccagaaga 9708
Query: 225 aagataataatttcaactaacattgctgaaacttccatcactgttgatgactgtgttgct 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9709 aagataataatttcaactaacattgctgaaacttccatcactgttgatgactgtgttgct 9768
Query: 285 accattgacaccggtcgtgttaaaacattaaattacgatccttcca 330
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9769 accattgacaccggtcgtgttaaaacattaaattacgatccttcca 9814
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7279
Number of Sequences: 1807
Number of extensions: 7279
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 2
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)