BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZH08FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1515 0.0
>3x_Contig1770
Length = 29267
Score = 1515 bits (764), Expect = 0.0
Identities = 861/886 (97%), Gaps = 6/886 (0%)
Strand = Plus / Plus
Query: 88 aacagtgcgagcagagatctaaaggtacaatgcgacaatcttttaggtgttagatcgact 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10016 aacagtgcgagcagagatctaaaggtacaatgcgacaatcttttaggtgttagatcgact 10075
Query: 148 aactcggccaattatttcagcaaatttacacactgagccatatacttaacagaaagtgag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10076 aactcggccaattatttcagcaaatttacacactgagccatatacttaacagaaagtgag 10135
Query: 208 aatgtctttgataagtagggcaaatcgtcttggaggtttcacgaccgatgcaaagcattg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10136 aatgtctttgataagtagggcaaatcgtcttggaggtttcacgaccgatgcaaagcattg 10195
Query: 268 ggaatacgaatggtccactactgctaaacaaaatgaaaatggtactgatgagaaggtaaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10196 ggaatacgaatggtccactactgctaaacaaaatgaaaatggtactgatgagaaggtaaa 10255
Query: 328 atataagttcaagcaatgggtaaaaaaagatcatcctttgagagatgtagttgaggatga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10256 atataagttcaagcaatgggtaaaaaaagatcatcctttgagagatgtagttgaggatga 10315
Query: 388 tacagatgttcttaacttagatgaatttgataggacgaagatagctaagaaaaatgctcg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10316 tacagatgttcttaacttagatgaatttgataggacgaagatagctaagaaaaatgctcg 10375
Query: 448 tgtccaggagaaaagtggcccagattcactctcaattaacgatataagaggagctgttgg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10376 tgtccaggagaaaagtggcccagattcactctcaattaacgatataagaggagctgttgg 10435
Query: 508 tggttctgacattcctgggttctcaggatcggatgctaagaaagaagccgagagtgaagc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10436 tggttctgacattcctgggttctcaggatcggatgctaagaaagaagccgagagtgaagc 10495
Query: 568 tgctgttgaaactcctgtggttgaaactccagcggaagaaactccggctgaagatacacc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10496 tgctgttgaaactcctgtggttgaaactccagcggaagaaactccggctgaagatacacc 10555
Query: 628 ggcagaggtaaaagaccaagaaggcgacgtanagatggaatgattcattatataacgatt 687
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 10556 ggcagaggtaaaagaccaagaaggcgacgtaaagatggaatgattcattatataacgatt 10615
Query: 688 acacctatatactgttattttactacgattcatggaatccagaatgtggcctggacgccc 747
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10616 acacctatatactgtaattttactacgattcatggaatccagaatgtggcctggacgccc 10675
Query: 748 actctcgaataagataaagacagttctttattcanaggagggcatgcaggataaaccatc 807
|||||||||||||||||||||||| ||| || || ||||||||| |||||| ||||||||
Sbjct: 10676 actctcgaataagataaagacagtccttcatccaaaggagggcaagcaggaaaaaccatc 10735
Query: 808 accgcttttgttctccacataggacgtatttgttgcgttggaaacatt-ctatat-aaac 865
||||||||||||||||||||||||||||| || |||||| || ||||| |||||| ||||
Sbjct: 10736 accgcttttgttctccacataggacgtatgtg-tgcgtttgagacattactatataaaac 10794
Query: 866 tattggcttttattattcacgttgttgggtttgatagccataattgagagggcatcgcga 925
|||||||||| ||||||||||||||||| |||||||| ||||| ||||| ||||||||||
Sbjct: 10795 tattggctttcattattcacgttgttggttttgatagtcataaatgagatggcatcgcga 10854
Query: 926 gc-gttttaattgaaagcttgt-tttttgcttcacgtttggatttt 969
|| |||||||| | |||| ||| ||| |||||||||||||||||||
Sbjct: 10855 gcggttttaatcg-aagcctgtatttctgcttcacgtttggatttt 10899
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6047
Number of Sequences: 1807
Number of extensions: 6047
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)