BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZH08RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig835 831 0.0
3x_Contig490 492 e-139
>3x_Contig835
Length = 2829
Score = 831 bits (419), Expect = 0.0
Identities = 513/535 (95%), Gaps = 7/535 (1%)
Strand = Plus / Plus
Query: 367 atactttaatgtgaaatcttttgagatttttttagttagcgactgaggatacattttaaa 426
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atactttaatgtgaa-tcttttgagatttttttagttagcgactgaggatacattttaaa 59
Query: 427 aacaaaggtcctcataaaacaaataagaaaggagcatcgtccgaattagataattataag 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 aacaaaggtcctcataaaacaaataagaaaggagcatcgtccgaattagataattataag 119
Query: 487 gtctagttaccagtagtgtagagtttaaattcattaaatttttaaatatatacgtaacta 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gtctagttaccagtagtgtagagtttaaattcattaaatttttaaatatatacgtaacta 179
Query: 547 atgaatacatatatgtgttcgtgattcgtttaaataaattacattagaaaattagaaatt 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 atgaatacatatatgtgttcgtgattcgtttaaataaattacattagaaaattagaaatt 239
Query: 607 agatgaatagtagtgtcagcaactgtatctaatctagagtaatctctagaagctggatta 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 agatgaatagtagtgtcagcaactgtatctaatctagagtaatctctagaagctggatta 299
Query: 667 ttaaaagacacttggaaaaagccagaaaacttactaagtgtacggtgagcattatttgct 726
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttaaaagacac-tggaaaaagccagaaaacttactaagtgtacggtgagcattatttgct 358
Query: 727 cgaacctgtccgtactggatcaaaac-tattatgagtttagagatgatatttggaaaaga 785
|||||||||||||||||||||||||| ||| ||||||| |||||||| | ||||||||
Sbjct: 359 cgaacctgtccgtactggatcaaaacatatcatgagttagaagatgataataggaaaaga 418
Query: 786 gagagataagt-aaccgttagattacaga-catgaacccgccagttctcgtattatctat 843
||||||||||| |||||| |||| ||||| || ||||| |||||||||||||||||||||
Sbjct: 419 gagagataagtaaaccgtaagataacagagcaggaaccagccagttctcgtattatctat 478
Query: 844 ctcatgtaaatggaattttcaattgtttggaagcttttgacgtgagccttgtgct 898
||||||| ||||| | |||||||| |||||||| |||||||||||||| |||||
Sbjct: 479 ctcatgt-aatgggagtttcaatttgttggaagc-tttgacgtgagcctcgtgct 531
>3x_Contig490
Length = 1611
Score = 492 bits (248), Expect = e-139
Identities = 248/248 (100%)
Strand = Plus / Minus
Query: 74 ccttttataacgtctacgtgttctaatatcagattactgtgttttgttgggtcaaattca 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ccttttataacgtctacgtgttctaatatcagattactgtgttttgttgggtcaaattca 189
Query: 134 gtatcctgatccgaattatcttgttcaaattcctttgttttatctgttctaaaatcagga 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gtatcctgatccgaattatcttgttcaaattcctttgttttatctgttctaaaatcagga 129
Query: 194 tcctggtttagggcagattcagtgacaaaatcagcaacgtctacttcctctataatcaaa 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tcctggtttagggcagattcagtgacaaaatcagcaacgtctacttcctctataatcaaa 69
Query: 254 ttagagtaagtagttggcatgtataggtattgacagcttctttaggctttcttgagtctt 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ttagagtaagtagttggcatgtataggtattgacagcttctttaggctttcttgagtctt 9
Query: 314 tcccgtag 321
||||||||
Sbjct: 8 tcccgtag 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7609
Number of Sequences: 1807
Number of extensions: 7609
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 2
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)