BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZH09FM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig305 1310 0.0
>3x_Contig305
Length = 1227
Score = 1310 bits (661), Expect = 0.0
Identities = 735/756 (97%), Gaps = 3/756 (0%)
Strand = Plus / Plus
Query: 181 aaaattctagctgcctacggtttgcccatcagtgttaatgataaatggtttaaagagtta 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 4 aaaattctagctgcctacggtttgcccatcagtgttaatgagaaatggtttaaagagtta 63
Query: 241 actttgaataaaaagacacctttggacgttttattgaagaagatgagtatcgacaaaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 actttgaataaaaagacacctttggacgttttattgaagaagatgagtatcgacaaaaag 123
Query: 301 aatgatggttcaaaaaagaaggttgtcatcctagaaaaaattggtaaatgttatggaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aatgatggttcaaaaaagaaggttgtcatcctagaaaaaattggtaaatgttatggaaca 183
Query: 361 tccgctcacgtagtttcagatgaagatttgagatttgttttgtcagatgaaaccttggtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tccgctcacgtagtttcagatgaagatttgagatttgttttgtcagatgaaaccttggtt 243
Query: 421 catccattcaataacatcccagaaggacaaaataaggtaatcacaccaccaggttctaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 catccattcaataacatcccagaaggacaaaataaggtaatcacaccaccaggttctaaa 303
Query: 481 tctatttcaaaccgtgctctaattctcgcagcattaggtaaaggtacgtgtaagatcaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tctatttcaaaccgtgctctaattctcgcagcattaggtaaaggtacgtgtaagatcaag 363
Query: 541 aacttgttgcattctgatgataccaaacatatgttaaatgcagttcaacagttgaagggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aacttgttgcattctgatgataccaaacatatgttaaatgcagttcaacagttgaagggg 423
Query: 601 gctactatctcttgggaagatgatggtgaaacagtagtagtccacggccaaggtggttcc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gctactatctcttgggaagatgatggtgaaacagtagtagtccacggccaaggtggttcc 483
Query: 661 acgttaaccgccccttctgaagcattatacttaggtaatgcgggtactgcttcaaggttc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 acgttaaccgccccttctgaagcattatacttaggtaatgcgggtactgcttcaaggttc 543
Query: 721 ttgactactgttgctgcatcggccaagatagatggtaagaatgaccatgtcatattaact 780
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 544 ttgactactgttgctgcattggccaagaaagatggtaagaatgaccatgtcatattaact 603
Query: 781 ggtaatgtcagaatgtcagaaagaccaatcgtacctctagtcgactctcttcgttccaac 840
||||||| |||||| ||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 604 ggtaatgcaagaatgcaggaaagaccaatcggacctctagtcgactctctccgttccaac 663
Query: 841 ggtct-aaaatcgattactttgacatacagggatctttacctttgaaaataaacac-gna 898
||||| |||||||||||||| ||| ||| |||||||||||||||||||||||||| | |
Sbjct: 664 ggtctaaaaatcgattacttgaacagacaaggatctttacctttgaaaataaacacagaa 723
Query: 899 acccattttaaa-gtgggaaaattgagttggctgcc 933
||| |||| ||| |||| ||||||||||||||||||
Sbjct: 724 accaatttcaaaggtggaaaaattgagttggctgcc 759
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6701
Number of Sequences: 1807
Number of extensions: 6701
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)