BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZH09RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1712 1473 0.0
>3x_Contig1712
Length = 23668
Score = 1473 bits (743), Expect = 0.0
Identities = 771/778 (99%), Gaps = 2/778 (0%)
Strand = Plus / Plus
Query: 47 acaagtaattctcatctttttttgacgggttcacctcagtcggactcccactaattcaat 106
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5507 acaagtaattctcatctctgtttgacgggttcacctcagtcggactcccactaattcaat 5566
Query: 107 tctagcccttacaaaattcaaactgtgcacttcaccagttttctttgtttatggctccag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5567 tctagcccttacaaaattcaaactgtgcacttcaccagttttctttgtttatggctccag 5626
Query: 167 catgttatcattctcttccgatctttgcagcaagcactaatggcaaaattgaaaccgcat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5627 catgttatcattctcttccgatctttgcagcaagcactaatggcaaaattgaaaccgcat 5686
Query: 227 taattcttttcttttccttcaacatatacaggctgttttcttcgcctaattacgtttgct 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5687 taattcttttcttttccttcaacatatacaggctgttttcttcgcctaattacgtttgct 5746
Query: 287 ctctacctagttattagtttttgatttatatctccgcttccacctaagagatcatatcac 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5747 ctctacctagttattagtttttgatttatatctccgcttccacctaagagatcatatcac 5806
Query: 347 ctaaaagatattaattgaaatatcgggggtatgcatccgttggtatgtatcattatcgtt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5807 ctaaaagatattaattgaaatatcgggggtatgcatccgttggtatgtatcattatcgtt 5866
Query: 407 taattcacaaaatacttccacagtttaacggctcgacaacattattttaagatcaacact 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5867 taattcacaaaatacttccacagtttaacggctcgacaacattattttaagatcaacact 5926
Query: 467 gataaggctcctctaatacgcatcgagttcatctgtaatttggaaagtactttacctttg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5927 gataaggctcctctaatacgcatcgagttcatctgtaatttggaaagtactttacctttg 5986
Query: 527 caagtcaaactccattttctaaaccccgatatagaaaagttgcaactgcagagccattct 586
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5987 caagtcaaactccattttttaaaccccgatatagaaaagttgcaactgcagagccattct 6046
Query: 587 gttaaaacggatttcagatgtcttatttctggctgctgtgtactaaataaagacattcta 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6047 gttaaaacggatttcagatgtcttatttctggctgctgtgtactaaataaagacattcta 6106
Query: 647 cctgatatttagcanattacgaatacctcgtctggattttctctagctataattatcttt 706
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6107 cctgatatttagcaaattacgaatacctcgtctggattttctctagctataattatcttt 6166
Query: 707 ctttttttttctttttgcatgtaccgtgcgcacggattgtacgatgttggatcttccgtt 766
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6167 c-ttttttttctttttgcatgtaccgtgcgcacggattgtacgatgttggatcttccgtt 6225
Query: 767 gcaaatcaagataattgaaaaagtgtccccccccaatatcattgataaaaccgttggt 824
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 6226 gcaaatcaagataattgaaaaagtgtccccccccaatagcattgat-aaaccgttggt 6282
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9339
Number of Sequences: 1807
Number of extensions: 9339
Number of successful extensions: 120
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)