BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZH10FM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig419 1221 0.0
3x_Contig848 583 e-166
>3x_Contig419
Length = 1943
Score = 1221 bits (616), Expect = 0.0
Identities = 648/655 (98%), Gaps = 3/655 (0%)
Strand = Plus / Plus
Query: 226 gtggttctgttttgtgc-agccaaagctcttctaactctgatgtgacaaagcaaaatacc 284
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 gtggttctgttttgtgccagccaaagctcttctaactctgatgtgacatagcaaaatacc 60
Query: 285 accccatgtaaacaaagaggacaaaccagacaacgccaataaccagtcgaatacttcacc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 accccatgtaaacaaagaggacaaaccagacaacgccaataaccagtcgaatacttcacc 120
Query: 345 ttcctttggagatgcagcaatgaaggatagcaaaccaaagacgcaagtc-accacaatac 403
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 121 ttcctttggagatgcagcaatgaaggatagcaaaccaaagacgcaagtcgaccacaatac 180
Query: 404 cgaccaatggtctaccggttctgtcaatgtaaccaaaaatctttggtaaagaaccttggt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgaccaatggtctaccggttctgtcaatgtaaccaaaaatctttggtaaagaaccttggt 240
Query: 464 tagccaatgcagccattgatcttgaacaaccaaagacagcgcaattaccaacagatagaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagccaatgcagccattgatcttgaacaaccaaagacagcgcaattaccaacagatagaa 300
Query: 524 cagcaatcaagataacaacgttgatcacagaaggtaaacctttaataccggcattttgaa 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cagcaatcaagataacaacgttgatcacagaaggtaaacctttaataccggcattttgaa 360
Query: 584 tggaaataacgaatggggatgcagcagcatcgacagaactttgtccaatcaatctatcac 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tggaaataacgaatggggatgcagcagcatcgacagaactttgtccaatcaatctatcac 420
Query: 644 tggtgtatggaaccaataggccgaccatcaacaaggcaaggatatagaaaagagtaattc 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tggtgtatggaaccaataggccgaccatcaacaaggcaaggatatagaaaagagtaattc 480
Query: 704 tccagaacacttgcttagcggcgcttggtatggattttcttgggtttgcagtttcagcag 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tccagaacacttgcttagcggcgcttggtatggattttcttgggtttgcagtttcagcag 540
Query: 764 cggccaaaccgaccaattcagaaccagcaaaggagaatgcagcagttacgaacacggtac 823
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 541 cggccaaaccgaccaattcagaaccagcaaaggagaatgcagcagtaacgaacacggaac 600
Query: 824 agacacccttgaacccattggc-aaggcacctgngttatgccatagcctaccacc 877
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 601 agacacccttgaacccattggcaaaggcacctgggttatgccatagcctaccacc 655
>3x_Contig848
Length = 3091
Score = 583 bits (294), Expect = e-166
Identities = 396/430 (92%)
Strand = Plus / Minus
Query: 100 gcactcggtttaccaccaattgggaacaaagcgatccagaattgggctattaaaattaat 159
||||| |||||| |||||||||||||||||||||||||||||||||| || || || ||
Sbjct: 430 gcacttggtttatcaccaattgggaacaaagcgatccagaattgggccatcaagatcaaa 371
Query: 160 ataattaggatcaagctgtacacggaaccccatacatcagttggtgcagtgaaactgatt 219
||||| | | || | ||| ||||||||||||||| |||||||||| |||||||||| |
Sbjct: 370 ataatcaatacgaaaccgtatacggaaccccatacaccagttggtgcggtgaaactgagt 311
Query: 220 ttagcagtggttctgttttgtgcagccaaagctcttctaactctgatgtgacaaagcaaa 279
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 310 tcagcagtggttctgttttgtgcggccaaagctcttctaactctgatgtgacaaagcatg 251
Query: 280 ataccaccccatgtaaacaaagaggacaaaccagacaacgccaataaccagtcgaatact 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ataccaccccatgtaaacaaagaggacaaaccagacaacgccaataaccagtcgaatact 191
Query: 340 tcaccttcctttggagatgcagcaatgaaggatagcaaaccaaagacgcaagtcaccaca 399
|||||||||||||||||||||||||||||||||| |||||||||||| ||||| || | |
Sbjct: 190 tcaccttcctttggagatgcagcaatgaaggataacaaaccaaagacacaagtgacaata 131
Query: 400 ataccgaccaatggtctaccggttctgtcaatgtaaccaaaaatctttggtaaagaacct 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ataccgaccaatggtctaccggttctgtcaatgtaaccaaaaatctttggtaaagaacct 71
Query: 460 tggttagccaatgcagccattgatcttgaacaaccaaagacagcgcaattaccaacagat 519
|||||||||||||||||||| |||||||| ||| |||| ||||| | ||||||||||||
Sbjct: 70 tggttagccaatgcagccatggatcttgagcaagcaaaaacagcagagttaccaacagat 11
Query: 520 agaacagcaa 529
||||||||||
Sbjct: 10 agaacagcaa 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5843
Number of Sequences: 1807
Number of extensions: 5843
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 2
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)