BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZH10RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1708 1612 0.0
>3x_Contig1708
Length = 19451
Score = 1612 bits (813), Expect = 0.0
Identities = 862/873 (98%), Gaps = 4/873 (0%)
Strand = Plus / Minus
Query: 46 ataaatcaactagtttatctttccatattagaagaatgtgaaaacagctacaggtatgga 105
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 9850 ataaatcaactagtttatcattccatattagaagaatgtgaaaacagctacaggtatgga 9791
Query: 106 cttttccagatgagcccagatgatgtatcaaaaaatatcccttggttcacaacaaatagc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9790 cttttccagatgagcccagatgatgtatcaaaaaatatcccttggttcacaacaaatagc 9731
Query: 166 ataatagaaaatcttaatgacatcttcttcttgttaaggcatgcctctgaagatcttgcc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9730 ataatagaaaatcttaatgacatcttcttcttgttaaggcatgcctctgaagatcttgcc 9671
Query: 226 gttgtgtcagaatttgtagaggaattactgctattggttaagtctctattttatatggtc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9670 gttgtgtcagaatttgtagaggaattactgctattggttaagtctctattttatatggtc 9611
Query: 286 aggcaaataaccatgtggattgatgcaaatgccattactgattctagttataaacagttt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9610 aggcaaataaccatgtggattgatgcaaatgccattactgattctagttataaacagttt 9551
Query: 346 ttcgaagaaaatcatttactttggaatagggtccttagggatgttaacaggtctcaggat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9550 ttcgaagaaaatcatttactttggaatagggtccttagggatgttaacaggtctcaggat 9491
Query: 406 tcaattctaatcacagatttttaccaagactttgaaggcttagttgaaactttgcaatct 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9490 tcaattctaatcacagatttttaccaagactttgaaggcttagttgaaactttgcaatct 9431
Query: 466 ctgccaaaaattaccgcattctctctatacgatgaattcttccagaaatacggatacgac 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9430 ctgccaaaaattaccgcattctctctatacgatgaattcttccagaaatacggatacgac 9371
Query: 526 tttgcaaaatccttattttcctactatatcaaggaagggctatgggatgatctttacgaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9370 tttgcaaaatccttattttcctactatatcaaggaagggctatgggatgatctttacgaa 9311
Query: 586 tcgtttggtgaaacccattcagaatatttggaccagttcttaggagaatgtcccgagtat 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9310 tcgtttggtgaaacccattcagaatatttggaccagttcttaggagaatgtcccgagtat 9251
Query: 646 ggcaaagttaaatggattggaaacatatattgccataaatacgacgaagcaactacaact 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9250 ggcaaagttaaatggattggaaacatatattgccataaatacgacgaagcaactacaact 9191
Query: 706 ttgttgagtatttctactggaactcaatcgctgggtcaagatttgaaacaaagacaggca 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9190 ttgttgagtatttctactggaactcaatcgctgggtcaagatttgaaacaaagacaggca 9131
Query: 766 caattgagtattgccaaattaacagctcttgccgcggaagttcaagatcttg-aaagcta 824
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 9130 caattgagtattgccaaattaacagctcttgccgcggaagttcaagatcttgaaaagcta 9071
Query: 825 aacgaaattc-aaccgaattagatcttatcgatgggcaaattcttttattccagaaacta 883
|||||||||| ||||||||||||||| |||||||||||||||||| ||| ||| |||||
Sbjct: 9070 aacgaaattcaaaccgaattagatctcatcgatgggcaaattcttctatcccaagaacta 9011
Query: 884 c-agaatcaactttc-acccactattcaaagac 914
| |||||||||| || |||||||||||||||||
Sbjct: 9010 caagaatcaactctcaacccactattcaaagac 8978
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7211
Number of Sequences: 1807
Number of extensions: 7211
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)