BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC17ZH12RM1.SCF screened BAC_end
         (929 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1774                                                        1536   0.0  

>3x_Contig1774 
          Length = 27771

 Score = 1536 bits (775), Expect = 0.0
 Identities = 824/835 (98%), Gaps = 4/835 (0%)
 Strand = Plus / Minus

                                                                        
Query: 57   agggacagtgttccaaagaggtccgagatctcgataacggccaacaaatttggaaatgcg 116
            ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3727 agggacagtggaccaaagaggtccgagatctcgataacggccaacaaatttggaaatgcg 3668

                                                                        
Query: 117  gaccgttagtggaaaacagtgaaaagaaatacggattcaccgtttttacctccaacttga 176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3667 gaccgttagtggaaaacagtgaaaagaaatacggattcaccgtttttacctccaacttga 3608

                                                                        
Query: 177  acgagatcacagagacagaaaaggatcatttaccaccaactgattcccggttgagacccg 236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3607 acgagatcacagagacagaaaaggatcatttaccaccaactgattcccggttgagacccg 3548

                                                                        
Query: 237  atattcgcctgtatgaaaacggtatcattacagaggctgaacaaatgaagctgtcactgg 296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3547 atattcgcctgtatgaaaacggtatcattacagaggctgaacaaatgaagctgtcactgg 3488

                                                                        
Query: 297  aacaaaagcaacgtgaaagaagagataagggcgaagacgcacaacctcaatacttcaaac 356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3487 aacaaaagcaacgtgaaagaagagataagggcgaagacgcacaacctcaatacttcaaac 3428

                                                                        
Query: 357  agattaaacccatgaaatggctccccgttactggtgaaaataactactgggaaagaagaa 416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3427 agattaaacccatgaaatggctccccgttactggtgaaaataactactgggaaagaagaa 3368

                                                                        
Query: 417  aaaggcacgattggagcaacaccaaatctttatggtgaaagaaaaaggtaaaaaagcacg 476
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3367 aaaggcacgattggagcaacaccaaatctttatggtgaaag-aaaaggtaaaaaagcacg 3309

                                                                        
Query: 477  ttgccattacattcggccgttactatctcggccactcatcactccgcatagtgtcaaaat 536
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3308 ttgccattacattcggccgttactatctcggccactcatcactccgcatagtgtcaaaat 3249

                                                                        
Query: 537  atgtataataaagtgtcagatttaaataacccatagaaaagaaactaactcaagagatca 596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3248 atgtataataaagtgtcagatttaaataacccatagaaaagaaactaactcaagagatca 3189

                                                                        
Query: 597  atacacaatccagcctaatgcatgccgaaccagaattttttattaattgcataaattctt 656
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3188 atacacaatccagcctaatgcatgccgaaccagaattttttattaattgcataaattctt 3129

                                                                        
Query: 657  cgaaagaaattcaagcgcgtgctatcagccgattcgaaatcccaagatctcgatctaatt 716
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3128 cgaaagaaattcaagcgcgtgctatcagccgattcgaaatcccaagatctcgatctaatt 3069

                                                                        
Query: 717  tccagcccgtgggtcggacgtaacaactcctctttttc-accttattcagtggcctaggg 775
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3068 tccagcccgtgggtcggacgtaacaactcctctttttcaaccttattcagtggcctaggg 3009

                                                                        
Query: 776  tagatacaaagacatatttactaaattacttcacatgccaaggcttttctgtgacagttt 835
            |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3008 tagatacaaagacatattcactaaattacttcacatgccaaggcttctctgtgacagttt 2949

                                                                   
Query: 836  tcatgcttttttgcagtcctctctgttt-aattgatgt-tttatgaacagaaaac 888
             ||||||||||||||||||||||||||| ||| ||||| | ||||||||||||||
Sbjct: 2948 ccatgcttttttgcagtcctctctgtttcaatagatgtatatatgaacagaaaac 2894


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7392
Number of Sequences: 1807
Number of extensions: 7392
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)