BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZA01FM1.SCF screened BAC_end
(984 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1516 912 0.0
>3x_Contig1516
Length = 8750
Score = 912 bits (460), Expect = 0.0
Identities = 502/516 (97%)
Strand = Plus / Plus
Query: 75 agatccgaacaaacgcaaggaattgggggagatagacattgaatggtgttccgtttagtt 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1434 agatccgaacaaacgcaaggaattgggggagatagacattgaatggtgttccgtttagtt 1493
Query: 135 tcataatgtataccataggatgtaagtgagaacggcggttgattcggtcacgcaaacgcc 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1494 tcataatgtataccataggatgtaagtgagaacggcggttgattcggtcacgcaaacgcc 1553
Query: 195 aataagactgttaaacatacgcaggattttgtcagcaagattcttttctgccgtttcttt 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1554 aataagactgttaaacatacgcaggattttgtcagcaagattcttttctgccgtttcttt 1613
Query: 255 ttaccgaaaatattcttgtgtcaggtcattcaaagatgacagaaaaacgtgatcaatgaa 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1614 ttaccgaaaatattcttgtgtcaggtcattcaaagatgacagaaaaacgtgatcaatgaa 1673
Query: 315 gagtgggcagaaaggtgggttgactgcatcgaccagattaggcaacagaaccgctgatca 374
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1674 gagtgggcagaaaggtgggttgactgcagcgaccagattaggcaacagaaccgctgatca 1733
Query: 375 tgagcatgtgaccttaaaatatcatggcttacgaactccaccaaaccacttggctcttcg 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1734 tgagcatgtgaccttaaaatatcatggcttacgaactccaccaaaccacttggctcttcg 1793
Query: 435 attgttagttttattttatttttttctttttttacaacaagagatttgtgaaattattat 494
||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||
Sbjct: 1794 attgttagttttattttatttttttttttttttacaacaagagatttgtgaaatcatcat 1853
Query: 495 ttttagatgagataccagatgatgtgaaatcaaatggtttgtgattgtaatcattgcgtt 554
| ||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 1854 ctcgagatgagatacgagatgaggtgaaatcaaatggtttgtgattgtaatcatggcgtc 1913
Query: 555 ttttttataatccataattgaaacataacgatggct 590
|||| ||||| ||||||||||||||||| |||||||
Sbjct: 1914 ttttctataagccataattgaaacataatgatggct 1949
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,513
Number of Sequences: 1807
Number of extensions: 18513
Number of successful extensions: 283
Number of sequences better than 1.0e-20: 1
length of query: 984
length of database: 10,358,551
effective HSP length: 16
effective length of query: 968
effective length of database: 10,329,639
effective search space: 9999090552
effective search space used: 9999090552
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)