BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC18ZA01RM1.SCF screened BAC_end
         (918 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1586                                                        1538   0.0  

>3x_Contig1586 
          Length = 12315

 Score = 1538 bits (776), Expect = 0.0
 Identities = 814/825 (98%), Gaps = 2/825 (0%)
 Strand = Plus / Plus

                                                                        
Query: 45   gctttcccaacgccattcatggttttcggcgccatcatgcaagtatccacttttaatacc 104
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1805 gctttcccaacgccattcatggtttacggcgccatcatgcaagtatccacttttaatacc 1864

                                                                        
Query: 105  actagcaatacctctgagaaataattcacaatgtcccaactgacgtgcgtttttgaacac 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1865 actagcaatacctctgagaaataattcacaatgtcccaactgacgtgcgtttttgaacac 1924

                                                                        
Query: 165  agttgtatcactaacccaccatggtgattgtaaaggctggaaataattcaataaataaga 224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1925 agttgtatcactaacccaccatggtgattgtaaaggctggaaataattcaataaataaga 1984

                                                                        
Query: 225  cgaatgtgtctttgtacctttggtagcatcaaacgttagtttttcaccagcattgaacat 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1985 cgaatgtgtctttgtacctttggtagcatcaaacgttagtttttcaccagcattgaacat 2044

                                                                        
Query: 285  attccttaactggaattgaatataaccgtcaccttccccattaccaatgtttgttcctgt 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2045 attccttaactggaattgaatataaccgtcaccttccccattaccaatgtttgttcctgt 2104

                                                                        
Query: 345  tttcgcactgaatctttttattggatgtaattggataattggaactacgtcaattaccga 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2105 tttcgcactgaatctttttattggatgtaattggataattggaactacgtcaattaccga 2164

                                                                        
Query: 405  taatgtttctggtccagaagaaggaaaatttaggtttccatagtccctttgtgatatctg 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2165 taatgtttctggtccagaagaaggaaaatttaggtttccatagtccctttgtgatatctg 2224

                                                                        
Query: 465  aacaggataactacccctgctatccaaactttgcgatactgattctaccattccgttacc 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2225 aacaggataactacccctgctatccaaactttgcgatactgattctaccattccgttacc 2284

                                                                        
Query: 525  gaccattttataatgaaaccaatccgaatacttgcacaattgttcaaaagtatctgctnt 584
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2285 gaccattttataatgaaaccaatccgaatacttgcacaattgttcaaaagtatctgcttt 2344

                                                                        
Query: 585  attaattgtctcagaaaggtaactctgtataacatcatctcggacttgttctgccccatt 644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2345 attaattgtctcagaaaggtaactctgtataacatcatctcggacttgttctgccccatt 2404

                                                                        
Query: 645  gagaacaacttgggacacatggataggtgtgtgcttattcttttggaatagatctagtaa 704
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2405 gagaacaacttgggacacatggataggtgtgtgcttattcttttggaatagatctagtaa 2464

                                                                        
Query: 705  gtaaattttcctgctgattttgtaagaactgctcttcggcggtgatcaaatccttcccat 764
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2465 gt-aattttcctgctgattttgtaagaactgctcttcggcggtgatcaaatccttcccat 2523

                                                                        
Query: 765  tatcgccattatgaacnctgtctttcaagcctgatggctcatgaataangttttccattg 824
            |||||||||||||||| ||||||| ||||||||||||||||||||| | |||||||||||
Sbjct: 2524 tatcgccattatgaaccctgtcttccaagcctgatggctcatgaattaggttttccattg 2583

                                                         
Query: 825  aggtcaattgcttacaaattagaggaaactggtcaaacccgatgg 869
            |||||||||||| |||||||||| | ||||||||||||| |||||
Sbjct: 2584 aggtcaattgctaacaaattaga-gtaactggtcaaaccggatgg 2627


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7180
Number of Sequences: 1807
Number of extensions: 7180
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)